Details

SpeciesHuman
Species subgroup
Subgroup type
Sequence NameIGKV6D-41*01
IUIS NameIGKV6D-41*01
Alternative names
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeGenomic and rearranged
MappedTrue
Paralogs
Paralog RepFalse

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

AccessionTypeRepositoryStartEnd
X93641NonlocationalGenBank1287
AC245506NonlocationalGenBank1295213532
NG_000833NonlocationalGenBank178556179136
GRCh38:NC_000002.12LocationalGenBank12123281212908

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

CDR delineation

CDR1 Start345
CDR1 End362
CDR2 Start414
CDR2 End422
CDR3 Start531

Non-Core Regions

UTR 5' Start
UTR 5' End
L-PART1 Start1
L-PART1 End49
L_PART1ATGGTGTCCCCGTTGCAATTCCTGCGGCTTCTGCTCCTCTGGGTTCCAG
L-PART2 Start256
L-PART2 End266
L_PART2CCTCCAGGGGT
v_rs_start554
v_rs_end581
V_HEPTAMERCACTGTG
V_NONAMERACAAAAATT

Extension

3' Extension
3' start
3' end
5' start
5' end

Additional Information

Sequence IDA02862
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version1
Release Date2023-07-10
Release Notes

Bulk upload of sequences for the AIRR-C Human IG germline sets

LocusIGK
Sequence TypeV
Gene Subgroup6D
Gene Designation41
Allele Designation01

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Information for this sequence was imported into OGRDB via bulk update with the following notes:
Sequence annotation is based on Genbank sample AC245506
VDJbase example haplotype: P1_I24 (1 seq)

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2023-07-10 11:24:45
Version 1 published

Bulk upload of sequences for the AIRR-C Human IG germline sets

Versions

All published versions of this sequence.

Sequence NameIMGT NameAlternative namesInference TypeAffirmation LevelSpecies subgroupSubgroup typeVersionDate
IGKV6D-41*01IGKV6D-41*01Genomic and rearranged112023-07-10