Sequence IGKV2D-28*01
Details
| Species | Human |
| Species subgroup | |
| Subgroup type | |
| Sequence Name | IGKV2D-28*01 |
| IUIS Name | IGKV2D-28*01 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Genomic Only |
| Mapped | True |
| Paralogs | IGKV2-28*01 |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End |
|---|---|---|---|---|
| X93632 | Nonlocational | GenBank | 1 | 302 |
| AC245506 | Nonlocational | GenBank | 122442 | 123205 |
| AC244255 | Nonlocational | GenBank | 89988 | 90751 |
| NG_000833 | Nonlocational | GenBank | 288078 | 288841 |
| GRCh38:NC_000002.12 | Locational | GenBank | 1102655 | 1103418 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 513 |
| CDR1 End | 545 |
| CDR2 Start | 597 |
| CDR2 End | 605 |
| CDR3 Start | 714 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | 1 |
| L-PART1 End | 49 |
| L_PART1 | ATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGGTCTCTG |
| L-PART2 Start | 424 |
| L-PART2 End | 434 |
| L_PART2 | GATCCAGTGGG |
| v_rs_start | 737 |
| v_rs_end | 764 |
| V_HEPTAMER | CACAGTG |
| V_NONAMER | ACAGAAACC |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A02839 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 1 |
| Release Date | 2023-07-10 |
| Release Notes | Bulk upload of sequences for the AIRR-C Human IG germline sets |
| Locus | IGK |
| Sequence Type | V |
| Gene Subgroup | 2D |
| Gene Designation | 28 |
| Allele Designation | 01 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2023-07-10 11:24:44 | Version 1 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Alternative names | Inference Type | Affirmation Level | Species subgroup | Subgroup type | Gene start | Gene end | UTR 5' Start | UTR 5' End | L-PART1 Start | L-PART1 End | L-PART2 Start | L-PART2 End | CDR1 Start | CDR1 End | CDR2 Start | CDR2 End | CDR3 Start | v_rs_start | v_rs_end | d_rs_3_prime_start | d_rs_3_prime_end | d_rs_5_prime_start | d_rs_5_prime_end | j_rs_start | j_rs_end | Codon Frame | Version | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGKV2D-28*01 | IGKV2D-28*01 | Genomic Only | 1 | 435 | 736 | 1 | 49 | 424 | 434 | 513 | 545 | 597 | 605 | 714 | 737 | 764 | 1 | 2023-07-10 |