Details

SpeciesMouse
Species subgroup129S1/SvImJ
Subgroup typestrain
Sequence NameIGKV-AYL4
IUIS NameMusmus IGKV4-72*01 F
Alternative namesKos et al: IGKV4-72*01_129
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityF
Inference TypeRearranged
Mapped
Paralogs
Paralog Rep

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

No Items

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

CDR delineation

CDR1 Start79
CDR1 End93
CDR2 Start145
CDR2 End153
CDR3 Start262

Non-Core Regions

UTR 5' Start
UTR 5' End
L-PART1 Start
L-PART1 End
L_PART1
L-PART2 Start
L-PART2 End
L_PART2
v_rs_start
v_rs_end
V_HEPTAMER
V_NONAMER

Extension

3' Extension
3' start
3' end
5' start
5' end

Additional Information

Sequence IDA01050
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version1
Release Date2022-05-03
Release Notes

This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1

LocusIGK
Sequence TypeV
Gene Subgroup
Gene Designation
Allele Designation

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

None

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2022-05-03 10:21:48
Version 1 published

This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1

Versions

All published versions of this sequence.

Sequence NameIMGT NameAlternative namesInference TypeAffirmation LevelSpecies subgroupSubgroup typeGene startGene endUTR 5' StartUTR 5' EndL-PART1 StartL-PART1 EndL-PART2 StartL-PART2 EndCDR1 StartCDR1 EndCDR2 StartCDR2 EndCDR3 Startv_rs_startv_rs_endd_rs_3_prime_startd_rs_3_prime_endd_rs_5_prime_startd_rs_5_prime_endj_rs_startj_rs_endCodon FrameVersionDate
IGKV-AYL4Musmus IGKV4-72*01 FKos et al: IGKV4-72*01_129Rearranged1129S1/SvImJstrain1286799314515326212022-05-03