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Germline Sets

Species Selection

Tools and Resources
Command Line Tools

For easy command line downloads, see download_germline_set in the receptor_utils package.

Want more FASTA header information? Try receptor-germline-tools.

Analysis Workflows

The receptor_utils documentation has walkthroughs for using germline sets with IgBLAST MiXCR and Cell Ranger.

Use the OGRDB REST API V2 for programmatic access.

Formats: For an explanation of different file formats and their usage, see this article.

Published Sets (click on Set Name for details and version history)

Set NameSpecies subgroupLocusRelease VersionRelease DateDownloadDOI
IGH_VDJArleeIGH12026-06-20 AIRR (JSON) FASTA Gapped FASTA Ungapped