Genotype 'P1_I12_S1_ogrdb_report' (Submission S00044)
NCBI Information
| Sample | Title |
|---|---|
| SAMEA4625104 | Naive B-Cell repertoire |
| Record Set | Title |
|---|---|
| ERR2567189 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGKV3-15*01_G107A | 1194 | ||||||||
| IGKV3D-15*01_A223C | 6 | ||||||||
| IGKV1E-12*01 | 199 | ||||||||
| IGKV1E-12*02 | 38 | ||||||||
| IGKV1E-12*03 | 174 | ||||||||
| IGKV1E-13*03 | 38 | ||||||||
| IGKV6E-21*01 | 94 | ||||||||
| IGKV6E-21*03 | 43 | ||||||||
| IGKV2E-28*01 | 1683 | ||||||||
| IGKV1E-33*01 | 1550 | ||||||||
| IGKV1E-37*01 | 105 | ||||||||
| IGKV1E-39*01 | 3008 | ||||||||
| IGKV2E-40*01 | 103 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGKV1-5*03 | 2116 | 1579 | 74.62 | 100.00 | 9.57 | 1281 | 1158 | ||||
| IGKV1-6*01 | 157 | 116 | 73.89 | 100.00 | 0.70 | 94 | 85 | ||||
| IGKV1-8*01 | 399 | 324 | 81.20 | 100.00 | 1.96 | 248 | 235 | ||||
| IGKV1-9*01 | 650 | 531 | 81.69 | 100.00 | 3.22 | 446 | 418 | ||||
| IGKV1-16*02 | 238 | 183 | 76.89 | 100.00 | 1.11 | 158 | 145 | ||||
| IGKV1-17*01 | 324 | 241 | 74.38 | 100.00 | 1.46 | 214 | 196 | ||||
| IGKV1-27*01 | 479 | 372 | 77.66 | 100.00 | 2.26 | 293 | 272 | ||||
| IGKV2/OR22-4*01 | 14 | 12 | 85.71 | 100.00 | 0.07 | 10 | 10 | ||||
| IGKV2-18*01 | 5 | 5 | 100.00 | 100.00 | 0.03 | 5 | 5 | ||||
| IGKV2-24*01 | 108 | 98 | 90.74 | 100.00 | 0.59 | 91 | 88 | ||||
| IGKV2-30*01 | 408 | 333 | 81.62 | 100.00 | 2.02 | 310 | 283 | ||||
| IGKV1/OR2-108*01 | 3 | 2 | 66.67 | 100.00 | 0.01 | 3 | 2 | ||||
| IGKV3/OR2-268*01 | 5 | 4 | 80.00 | 100.00 | 0.02 | 5 | 4 | ||||
| IGKV3-7*04 | 33 | 26 | 78.79 | 100.00 | 0.16 | 29 | 25 | ||||
| IGKV3-11*01 | 2526 | 1808 | 71.58 | 100.00 | 10.96 | 1409 | 1292 | ||||
| IGKV3-15*01 | 929 | 677 | 72.87 | 44.00 | 4.10 | 605 | 552 | ||||
| IGKV3-15*01_G107A | 1194 | 811 | 67.92 | 56.00 | 4.92 | 723 | 655 | ||||
| IGKV3-20*01 | 2841 | 1976 | 69.55 | 100.00 | 11.98 | 1599 | 1427 | ||||
| IGKV4-1*01 | 2160 | 1459 | 67.55 | 100.00 | 8.84 | 1048 | 942 | ||||
| IGKV5-2*01 | 64 | 36 | 56.25 | 100.00 | 0.22 | 54 | 32 | ||||
| IGKV7-3*01 | 7 | 6 | 85.71 | 100.00 | 0.04 | 7 | 6 | ||||
| IGKV3D-7*01 | 11 | 10 | 90.91 | 100.00 | 0.06 | 10 | 9 | ||||
| IGKV1D-8*01 | 200 | 145 | 72.50 | 100.00 | 0.88 | 103 | 97 | ||||
| IGKV3D-11*01 | 20 | 13 | 65.00 | 100.00 | 0.08 | 17 | 13 | ||||
| IGKV3D-15*01 | 109 | 93 | 85.32 | 95.00 | 0.56 | 93 | 84 | ||||
| IGKV3D-15*01_A223C | 6 | 5 | 83.33 | 5.00 | 0.03 | 6 | 5 | ||||
| IGKV1D-16*01 | 65 | 53 | 81.54 | 100.00 | 0.32 | 45 | 41 | ||||
| IGKV1D-17*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| IGKV2D-18*01 | 1 | 1 | 100.00 | 100.00 | 0.01 | 1 | 1 | ||||
| IGKV3D-20*01 | 124 | 100 | 80.65 | 100.00 | 0.61 | 92 | 83 | ||||
| IGKV2D-24*01 | 1 | 1 | 100.00 | 100.00 | 0.01 | 1 | 1 | ||||
| IGKV2D-26*03 | 16 | 12 | 75.00 | 100.00 | 0.07 | 14 | 11 | ||||
| IGKV2D-29*01 | 305 | 250 | 81.97 | 100.00 | 1.52 | 209 | 196 | ||||
| IGKV2D-30*01 | 44 | 36 | 81.82 | 100.00 | 0.22 | 39 | 35 | ||||
| IGKV6D-41*01 | 3 | 3 | 100.00 | 100.00 | 0.02 | 3 | 3 | ||||
| IGKV1D-43*01 | 44 | 38 | 86.36 | 100.00 | 0.23 | 43 | 38 | ||||
| IGKV1E-12*01 | 199 | 158 | 79.40 | 48.00 | 0.96 | 116 | 110 | ||||
| IGKV1E-12*02 | 38 | 31 | 81.58 | 9.00 | 0.19 | 21 | 19 | ||||
| IGKV1E-12*03 | 174 | 140 | 80.46 | 42.00 | 0.85 | 110 | 106 | ||||
| IGKV1E-13*03 | 38 | 32 | 84.21 | 100.00 | 0.19 | 33 | 29 | ||||
| IGKV6E-21*01 | 94 | 76 | 80.85 | 69.00 | 0.46 | 72 | 66 | ||||
| IGKV6E-21*03 | 43 | 34 | 79.07 | 31.00 | 0.21 | 37 | 30 | ||||
| IGKV2E-28*01 | 1683 | 1215 | 72.19 | 100.00 | 7.37 | 940 | 848 | ||||
| IGKV1E-33*01 | 1550 | 1184 | 76.39 | 100.00 | 7.18 | 901 | 835 | ||||
| IGKV1E-37*01 | 105 | 89 | 84.76 | 100.00 | 0.54 | 83 | 78 | ||||
| IGKV1E-39*01 | 3008 | 2094 | 69.61 | 100.00 | 12.69 | 1553 | 1409 | ||||
| IGKV2E-40*01 | 103 | 84 | 81.55 | 100.00 | 0.51 | 77 | 70 | ||||
| Totals | 22645 | 16496 | 72.85 |