Genotype 'P1_I12_S1_ogrdb_report' (Submission S00044)


Genotype Name	P1_I12_S1_ogrdb_report
Subject ID	S12
Locus	IGK
Sequence Type	V
Genotype Filename	P1_I12_S1_ogrdb_report.csv
Tool/Settings	TIgGER

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4625104	Naive B-Cell repertoire

Record Set	Title
ERR2567189	Illumina MiSeq paired end sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)	Sequence
**IGKV3-1501_G107A***	1194
IGKV3D-1501_A223C*	6
IGKV1E-1201*	199
IGKV1E-1202*	38
IGKV1E-1203*	174
IGKV1E-1303*	38
IGKV6E-2101*	94
IGKV6E-2103*	43
IGKV2E-2801*	1683
IGKV1E-3301*	1550
IGKV1E-3701*	105
IGKV1E-3901*	3008
IGKV2E-4001*	103

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated
IGKV1-5*03	2116	1579	74.62	100.00	9.57	1281	1158
IGKV1-6*01	157	116	73.89	100.00	0.70	94	85
IGKV1-8*01	399	324	81.20	100.00	1.96	248	235
IGKV1-9*01	650	531	81.69	100.00	3.22	446	418
IGKV1-16*02	238	183	76.89	100.00	1.11	158	145
IGKV1-17*01	324	241	74.38	100.00	1.46	214	196
IGKV1-27*01	479	372	77.66	100.00	2.26	293	272
IGKV2/OR22-4*01	14	12	85.71	100.00	0.07	10	10
IGKV2-18*01	5	5	100.00	100.00	0.03	5	5
IGKV2-24*01	108	98	90.74	100.00	0.59	91	88
IGKV2-30*01	408	333	81.62	100.00	2.02	310	283
IGKV1/OR2-108*01	3	2	66.67	100.00	0.01	3	2
IGKV3/OR2-268*01	5	4	80.00	100.00	0.02	5	4
IGKV3-7*04	33	26	78.79	100.00	0.16	29	25
IGKV3-11*01	2526	1808	71.58	100.00	10.96	1409	1292
IGKV3-15*01	929	677	72.87	44.00	4.10	605	552
**IGKV3-1501_G107A***	1194	811	67.92	56.00	4.92	723	655
IGKV3-20*01	2841	1976	69.55	100.00	11.98	1599	1427
IGKV4-1*01	2160	1459	67.55	100.00	8.84	1048	942
IGKV5-2*01	64	36	56.25	100.00	0.22	54	32
IGKV7-3*01	7	6	85.71	100.00	0.04	7	6
IGKV3D-7*01	11	10	90.91	100.00	0.06	10	9
IGKV1D-8*01	200	145	72.50	100.00	0.88	103	97
IGKV3D-11*01	20	13	65.00	100.00	0.08	17	13
IGKV3D-15*01	109	93	85.32	95.00	0.56	93	84
IGKV3D-1501_A223C*	6	5	83.33	5.00	0.03	6	5
IGKV1D-16*01	65	53	81.54	100.00	0.32	45	41
IGKV1D-17*01	1	0	0.00	100.00	0.00	1	0
IGKV2D-18*01	1	1	100.00	100.00	0.01	1	1
IGKV3D-20*01	124	100	80.65	100.00	0.61	92	83
IGKV2D-24*01	1	1	100.00	100.00	0.01	1	1
IGKV2D-26*03	16	12	75.00	100.00	0.07	14	11
IGKV2D-29*01	305	250	81.97	100.00	1.52	209	196
IGKV2D-30*01	44	36	81.82	100.00	0.22	39	35
IGKV6D-41*01	3	3	100.00	100.00	0.02	3	3
IGKV1D-43*01	44	38	86.36	100.00	0.23	43	38
IGKV1E-1201*	199	158	79.40	48.00	0.96	116	110
IGKV1E-1202*	38	31	81.58	9.00	0.19	21	19
IGKV1E-1203*	174	140	80.46	42.00	0.85	110	106
IGKV1E-1303*	38	32	84.21	100.00	0.19	33	29
IGKV6E-2101*	94	76	80.85	69.00	0.46	72	66
IGKV6E-2103*	43	34	79.07	31.00	0.21	37	30
IGKV2E-2801*	1683	1215	72.19	100.00	7.37	940	848
IGKV1E-3301*	1550	1184	76.39	100.00	7.18	901	835
IGKV1E-3701*	105	89	84.76	100.00	0.54	83	78
IGKV1E-3901*	3008	2094	69.61	100.00	12.69	1553	1409
IGKV2E-4001*	103	84	81.55	100.00	0.51	77	70
Totals	22645	16496	72.85