Genotype 'P1_I24_S1_ogrdb_report' (Submission S00043)


Genotype Name	P1_I24_S1_ogrdb_report
Subject ID	S24
Locus	IGK
Sequence Type	V
Genotype Filename	P1_I24_S1_ogrdb_report.csv
Tool/Settings	TIgGER

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4625116	Naive B-Cell repertoire

Record Set	Title
ERR2567201	Illumina MiSeq paired end sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)	Sequence
**IGKV3-1501_A117G***	775
IGKV5-201_C214T*	11
IGKV1E-1201*	108
IGKV1E-1202*	28
IGKV1E-1203*	95
IGKV1E-1303*	24
IGKV6E-2101*	53
IGKV6E-2103*	37
IGKV2E-2801*	830
IGKV1E-3301*	1095
IGKV1E-3701*	52
IGKV1E-3901*	2376
IGKV2E-4001*	57

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated
IGKV1-5*03	1380	1101	79.78	100.00	9.91	907	852
IGKV1-6*01	89	72	80.90	100.00	0.65	56	52
IGKV1-8*01	226	189	83.63	100.00	1.70	157	146
IGKV1-9*01	567	459	80.95	100.00	4.13	413	388
IGKV1-16*02	117	95	81.20	100.00	0.85	92	83
IGKV1-17*01	122	99	81.15	100.00	0.89	89	79
IGKV1-27*01	261	215	82.38	100.00	1.93	189	178
IGKV2/OR22-4*01	8	8	100.00	100.00	0.07	7	7
IGKV2-18*01	3	3	100.00	100.00	0.03	3	3
IGKV2-24*01	47	42	89.36	100.00	0.38	40	38
IGKV2-30*01	247	222	89.88	100.00	2.00	216	204
IGKV1/OR2-108*01	1	1	100.00	100.00	0.01	1	1
IGKV3-7*04	21	16	76.19	100.00	0.14	21	16
IGKV3-11*01	1825	1243	68.11	100.00	11.19	1109	976
IGKV3-15*01	746	513	68.77	49.00	4.62	487	428
**IGKV3-1501_A117G***	775	510	65.81	51.00	4.59	489	424
IGKV3-20*01	1781	1225	68.78	100.00	11.02	1110	960
IGKV4-1*01	1246	913	73.27	100.00	8.22	729	665
IGKV5-2*01	18	18	100.00	62.00	0.16	17	17
IGKV5-201_C214T*	11	9	81.82	38.00	0.08	10	9
IGKV7-3*01	8	7	87.50	100.00	0.06	8	7
IGKV3D-7*01	15	11	73.33	100.00	0.10	13	11
IGKV1D-8*01	107	91	85.05	100.00	0.82	72	71
IGKV3D-11*01	21	18	85.71	100.00	0.16	19	16
IGKV3D-15*01	97	66	68.04	100.00	0.59	78	62
IGKV1D-16*01	47	37	78.72	100.00	0.33	33	31
IGKV3D-20*01	92	61	66.30	100.00	0.55	73	58
IGKV2D-24*01	2	2	100.00	100.00	0.02	2	2
IGKV2D-26*03	5	5	100.00	100.00	0.04	4	4
IGKV2D-29*01	94	80	85.11	100.00	0.72	72	68
IGKV2D-30*01	25	24	96.00	100.00	0.22	24	23
IGKV6D-41*01	2	1	50.00	100.00	0.01	2	1
IGKV1D-43*01	24	22	91.67	100.00	0.20	23	21
IGKV1E-1201*	108	89	82.41	47.00	0.80	64	60
IGKV1E-1202*	28	24	85.71	12.00	0.22	18	17
IGKV1E-1203*	95	76	80.00	41.00	0.68	69	65
IGKV1E-1303*	24	22	91.67	100.00	0.20	23	21
IGKV6E-2101*	53	44	83.02	59.00	0.40	46	40
IGKV6E-2103*	37	27	72.97	41.00	0.24	30	25
IGKV2E-2801*	830	711	85.66	100.00	6.40	579	553
IGKV1E-3301*	1095	884	80.73	100.00	7.96	729	679
IGKV1E-3701*	52	51	98.08	100.00	0.46	52	51
IGKV1E-3901*	2376	1764	74.24	100.00	15.87	1370	1294
IGKV2E-4001*	57	42	73.68	100.00	0.38	42	32
Totals	14785	11112	75.16