Genotype 'P1_I24_S1_ogrdb_report' (Submission S00043)
NCBI Information
| Sample | Title |
|---|---|
| SAMEA4625116 | Naive B-Cell repertoire |
| Record Set | Title |
|---|---|
| ERR2567201 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGKV3-15*01_A117G | 775 | ||||||||
| IGKV5-2*01_C214T | 11 | ||||||||
| IGKV1E-12*01 | 108 | ||||||||
| IGKV1E-12*02 | 28 | ||||||||
| IGKV1E-12*03 | 95 | ||||||||
| IGKV1E-13*03 | 24 | ||||||||
| IGKV6E-21*01 | 53 | ||||||||
| IGKV6E-21*03 | 37 | ||||||||
| IGKV2E-28*01 | 830 | ||||||||
| IGKV1E-33*01 | 1095 | ||||||||
| IGKV1E-37*01 | 52 | ||||||||
| IGKV1E-39*01 | 2376 | ||||||||
| IGKV2E-40*01 | 57 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGKV1-5*03 | 1380 | 1101 | 79.78 | 100.00 | 9.91 | 907 | 852 | ||||
| IGKV1-6*01 | 89 | 72 | 80.90 | 100.00 | 0.65 | 56 | 52 | ||||
| IGKV1-8*01 | 226 | 189 | 83.63 | 100.00 | 1.70 | 157 | 146 | ||||
| IGKV1-9*01 | 567 | 459 | 80.95 | 100.00 | 4.13 | 413 | 388 | ||||
| IGKV1-16*02 | 117 | 95 | 81.20 | 100.00 | 0.85 | 92 | 83 | ||||
| IGKV1-17*01 | 122 | 99 | 81.15 | 100.00 | 0.89 | 89 | 79 | ||||
| IGKV1-27*01 | 261 | 215 | 82.38 | 100.00 | 1.93 | 189 | 178 | ||||
| IGKV2/OR22-4*01 | 8 | 8 | 100.00 | 100.00 | 0.07 | 7 | 7 | ||||
| IGKV2-18*01 | 3 | 3 | 100.00 | 100.00 | 0.03 | 3 | 3 | ||||
| IGKV2-24*01 | 47 | 42 | 89.36 | 100.00 | 0.38 | 40 | 38 | ||||
| IGKV2-30*01 | 247 | 222 | 89.88 | 100.00 | 2.00 | 216 | 204 | ||||
| IGKV1/OR2-108*01 | 1 | 1 | 100.00 | 100.00 | 0.01 | 1 | 1 | ||||
| IGKV3-7*04 | 21 | 16 | 76.19 | 100.00 | 0.14 | 21 | 16 | ||||
| IGKV3-11*01 | 1825 | 1243 | 68.11 | 100.00 | 11.19 | 1109 | 976 | ||||
| IGKV3-15*01 | 746 | 513 | 68.77 | 49.00 | 4.62 | 487 | 428 | ||||
| IGKV3-15*01_A117G | 775 | 510 | 65.81 | 51.00 | 4.59 | 489 | 424 | ||||
| IGKV3-20*01 | 1781 | 1225 | 68.78 | 100.00 | 11.02 | 1110 | 960 | ||||
| IGKV4-1*01 | 1246 | 913 | 73.27 | 100.00 | 8.22 | 729 | 665 | ||||
| IGKV5-2*01 | 18 | 18 | 100.00 | 62.00 | 0.16 | 17 | 17 | ||||
| IGKV5-2*01_C214T | 11 | 9 | 81.82 | 38.00 | 0.08 | 10 | 9 | ||||
| IGKV7-3*01 | 8 | 7 | 87.50 | 100.00 | 0.06 | 8 | 7 | ||||
| IGKV3D-7*01 | 15 | 11 | 73.33 | 100.00 | 0.10 | 13 | 11 | ||||
| IGKV1D-8*01 | 107 | 91 | 85.05 | 100.00 | 0.82 | 72 | 71 | ||||
| IGKV3D-11*01 | 21 | 18 | 85.71 | 100.00 | 0.16 | 19 | 16 | ||||
| IGKV3D-15*01 | 97 | 66 | 68.04 | 100.00 | 0.59 | 78 | 62 | ||||
| IGKV1D-16*01 | 47 | 37 | 78.72 | 100.00 | 0.33 | 33 | 31 | ||||
| IGKV3D-20*01 | 92 | 61 | 66.30 | 100.00 | 0.55 | 73 | 58 | ||||
| IGKV2D-24*01 | 2 | 2 | 100.00 | 100.00 | 0.02 | 2 | 2 | ||||
| IGKV2D-26*03 | 5 | 5 | 100.00 | 100.00 | 0.04 | 4 | 4 | ||||
| IGKV2D-29*01 | 94 | 80 | 85.11 | 100.00 | 0.72 | 72 | 68 | ||||
| IGKV2D-30*01 | 25 | 24 | 96.00 | 100.00 | 0.22 | 24 | 23 | ||||
| IGKV6D-41*01 | 2 | 1 | 50.00 | 100.00 | 0.01 | 2 | 1 | ||||
| IGKV1D-43*01 | 24 | 22 | 91.67 | 100.00 | 0.20 | 23 | 21 | ||||
| IGKV1E-12*01 | 108 | 89 | 82.41 | 47.00 | 0.80 | 64 | 60 | ||||
| IGKV1E-12*02 | 28 | 24 | 85.71 | 12.00 | 0.22 | 18 | 17 | ||||
| IGKV1E-12*03 | 95 | 76 | 80.00 | 41.00 | 0.68 | 69 | 65 | ||||
| IGKV1E-13*03 | 24 | 22 | 91.67 | 100.00 | 0.20 | 23 | 21 | ||||
| IGKV6E-21*01 | 53 | 44 | 83.02 | 59.00 | 0.40 | 46 | 40 | ||||
| IGKV6E-21*03 | 37 | 27 | 72.97 | 41.00 | 0.24 | 30 | 25 | ||||
| IGKV2E-28*01 | 830 | 711 | 85.66 | 100.00 | 6.40 | 579 | 553 | ||||
| IGKV1E-33*01 | 1095 | 884 | 80.73 | 100.00 | 7.96 | 729 | 679 | ||||
| IGKV1E-37*01 | 52 | 51 | 98.08 | 100.00 | 0.46 | 52 | 51 | ||||
| IGKV1E-39*01 | 2376 | 1764 | 74.24 | 100.00 | 15.87 | 1370 | 1294 | ||||
| IGKV2E-40*01 | 57 | 42 | 73.68 | 100.00 | 0.38 | 42 | 32 | ||||
| Totals | 14785 | 11112 | 75.16 |