Sample | Title |
---|---|
SAMEA4625158 | Naive B-Cell repertoire |
Record Set | Title |
---|---|
ERR2567243 | Illumina MiSeq paired end sequencing |
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
---|---|---|---|---|---|---|---|---|---|
IGHV1-69*08_C191T | 440 | IGHV1-69*02 | IGHV1-69*10 | 0 | 4 | -319G,-320A | 0 | ||
IGHV3-30*04_C201T | 470 | IGHV3-30*04 | IGHV3-30-3*01 | 1 | 2 | C201T | 0 | ||
IGHV4-59*08 | 652 |
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
---|---|---|---|---|---|---|---|---|---|---|---|
IGHV1-2*04 | 304 | 237 | 77.96 | 100.00 | 0.61 | 282 | 229 | IGHJ6 | 13:87 | ||
IGHV1-3*01 | 859 | 738 | 85.91 | 100.00 | 1.89 | 812 | 711 | IGHJ6 | 56:44 | ||
IGHV1-8*01 | 485 | 432 | 89.07 | 100.00 | 1.11 | 450 | 404 | IGHJ6 | 0:100 | ||
IGHV1-18*01 | 524 | 465 | 88.74 | 45.00 | 1.19 | 488 | 438 | IGHJ6 | 1:99 | ||
IGHV1-18*04 | 645 | 584 | 90.54 | 55.00 | 1.50 | 611 | 561 | IGHJ6 | 100:0 | ||
IGHV1-24*01 | 352 | 320 | 90.91 | 100.00 | 0.82 | 329 | 300 | IGHJ6 | 69:31 | ||
IGHV1-45*02 | 6 | 6 | 100.00 | 100.00 | 0.02 | 6 | 6 | IGHJ6 | |||
IGHV1-46*01 | 1129 | 984 | 87.16 | 100.00 | 2.52 | 1051 | 932 | IGHJ6 | 62:38 | ||
IGHV1-58*02 | 124 | 114 | 91.94 | 100.00 | 0.29 | 115 | 108 | IGHJ6 | 74:26 | ||
IGHV1-69*10 | 832 | 739 | 88.82 | 65.00 | 1.89 | 760 | 691 | IGHJ6 | 99:1 | ||
IGHV1-69*08_C191T | 440 | 397 | 90.23 | 35.00 | 1.02 | 395 | 364 | IGHJ6 | 0:100 | ||
IGHV2-5*01 | 430 | 376 | 87.44 | 45.00 | 0.96 | 408 | 363 | IGHJ6 | 100:0 | ||
IGHV2-5*02 | 534 | 459 | 85.96 | 55.00 | 1.18 | 499 | 439 | IGHJ6 | 0:100 | ||
IGHV2-26*01 | 358 | 324 | 90.50 | 100.00 | 0.83 | 337 | 314 | IGHJ6 | 57:43 | ||
IGHV2-70*12 | 4 | 0 | 0.00 | 100.00 | 0.00 | 2 | 0 | IGHJ6 | 100:0 | ||
IGHV3-7*01 | 407 | 325 | 79.85 | 64.00 | 0.83 | 372 | 306 | IGHJ6 | 2:98 | ||
IGHV3-7*05 | 229 | 181 | 79.04 | 36.00 | 0.46 | 215 | 173 | IGHJ6 | 100:0 | ||
IGHV3-9*01 | 908 | 758 | 83.48 | 100.00 | 1.94 | 810 | 695 | IGHJ6 | 1:99 | ||
IGHV3-11*01 | 434 | 371 | 85.48 | 57.00 | 0.95 | 399 | 350 | IGHJ6 | 0:100 | ||
IGHV3-11*06 | 328 | 267 | 81.40 | 43.00 | 0.68 | 297 | 248 | IGHJ6 | 100:0 | ||
IGHV3-13*01 | 102 | 85 | 83.33 | 59.00 | 0.22 | 94 | 81 | IGHJ6 | 0:100 | ||
IGHV3-13*05 | 72 | 64 | 88.89 | 41.00 | 0.16 | 67 | 60 | IGHJ6 | 100:0 | ||
IGHV3-15*01 | 543 | 463 | 85.27 | 48.00 | 1.19 | 497 | 431 | IGHJ6 | 100:0 | ||
IGHV3-15*07 | 600 | 512 | 85.33 | 52.00 | 1.31 | 547 | 474 | IGHJ6 | 1:99 | ||
IGHV3-20*04 | 26 | 19 | 73.08 | 100.00 | 0.05 | 25 | 19 | IGHJ6 | 0:100 | ||
IGHV3-21*01 | 2285 | 1974 | 86.39 | 100.00 | 5.06 | 2064 | 1815 | IGHJ6 | 57:43 | ||
IGHV3-23*01 | 2790 | 2333 | 83.62 | 61.00 | 5.97 | 2494 | 2140 | IGHJ6 | 1:99 | ||
IGHV3-23*04 | 1807 | 1489 | 82.40 | 39.00 | 3.81 | 1638 | 1388 | IGHJ6 | 100:0 | ||
IGHV3-30-3*01 | 2977 | 2456 | 82.50 | 100.00 | 6.29 | 2697 | 2280 | IGHJ6 | 64:36 | ||
IGHV3-30*18 | 2884 | 2404 | 83.36 | 86.00 | 6.16 | 2634 | 2241 | IGHJ6 | 68:32 | ||
IGHV3-30*04_C201T | 470 | 394 | 83.83 | 14.00 | 1.01 | 432 | 374 | IGHJ6 | 1:99 | ||
IGHV3-33*06 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
IGHV3-38-3*01 | 3 | 2 | 66.67 | 100.00 | 0.01 | 3 | 2 | IGHJ6 | 100:0 | ||
IGHV3-43*01 | 235 | 201 | 85.53 | 100.00 | 0.51 | 211 | 184 | IGHJ6 | 74:26 | ||
IGHV3-48*02 | 1077 | 915 | 84.96 | 100.00 | 2.34 | 994 | 863 | IGHJ6 | 63:37 | ||
IGHV3-49*04 | 264 | 219 | 82.95 | 61.00 | 0.56 | 241 | 206 | IGHJ6 | 100:0 | ||
IGHV3-49*05 | 172 | 132 | 76.74 | 39.00 | 0.34 | 158 | 129 | IGHJ6 | 0:100 | ||
IGHV3-53*01 | 354 | 310 | 87.57 | 67.00 | 0.79 | 324 | 288 | IGHJ6 | 1:99 | ||
IGHV3-53*04 | 172 | 141 | 81.98 | 33.00 | 0.36 | 155 | 131 | IGHJ6 | 100:0 | ||
IGHV3-64*01 | 180 | 159 | 88.33 | 100.00 | 0.41 | 168 | 151 | IGHJ6 | 65:35 | ||
IGHV3-66*02 | 342 | 301 | 88.01 | 100.00 | 0.77 | 297 | 268 | IGHJ6 | 0:100 | ||
IGHV3-71*03 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
IGHV3-72*01 | 92 | 70 | 76.09 | 100.00 | 0.18 | 85 | 67 | IGHJ6 | 45:55 | ||
IGHV3-73*01 | 181 | 150 | 82.87 | 100.00 | 0.38 | 158 | 133 | IGHJ6 | 52:48 | ||
IGHV3-74*01 | 346 | 292 | 84.39 | 100.00 | 0.75 | 318 | 270 | IGHJ6 | 46:54 | ||
IGHV3-43D*03 | 146 | 126 | 86.30 | 100.00 | 0.32 | 137 | 122 | IGHJ6 | 100:0 | ||
IGHV3-64D*08 | 329 | 276 | 83.89 | 100.00 | 0.71 | 303 | 255 | IGHJ6 | 100:0 | ||
IGHV4-4*02 | 427 | 377 | 88.29 | 100.00 | 0.97 | 407 | 364 | IGHJ6 | 2:98 | ||
IGHV4-28*01 | 5 | 3 | 60.00 | 71.00 | 0.01 | 4 | 3 | IGHJ6 | |||
IGHV4-28*03 | 1 | 1 | 100.00 | 14.00 | 0.00 | 1 | 1 | IGHJ6 | 0:100 | ||
IGHV4-28*06 | 1 | 0 | 0.00 | 14.00 | 0.00 | 1 | 0 | IGHJ6 | |||
IGHV4-30-2*01 | 351 | 310 | 88.32 | 100.00 | 0.79 | 331 | 296 | IGHJ6 | 47:53 | ||
IGHV4-30-4*01 | 765 | 670 | 87.58 | 100.00 | 1.72 | 725 | 643 | IGHJ6 | 56:44 | ||
IGHV4-34*01 | 4894 | 4348 | 88.84 | 100.00 | 11.14 | 4465 | 4061 | IGHJ6 | 46:54 | ||
IGHV4-38-2*02 | 899 | 778 | 86.54 | 100.00 | 1.99 | 788 | 711 | IGHJ6 | 99:1 | ||
IGHV4-39*01 | 1767 | 1547 | 87.55 | 40.00 | 3.96 | 1584 | 1414 | IGHJ6 | 0:100 | ||
IGHV4-39*07 | 2650 | 2319 | 87.51 | 60.00 | 5.94 | 2364 | 2135 | IGHJ6 | 100:0 | ||
IGHV4-55*08 | 2 | 1 | 50.00 | 100.00 | 0.00 | 2 | 1 | IGHJ6 | |||
IGHV4-59*01 | 1594 | 1405 | 88.14 | 71.00 | 3.60 | 1499 | 1342 | IGHJ6 | 48:52 | ||
IGHV4-59*08 | 652 | 570 | 87.42 | 29.00 | 1.46 | 615 | 547 | IGHJ6 | 98:2 | ||
IGHV4-61*02 | 1077 | 933 | 86.63 | 100.00 | 2.39 | 1003 | 888 | IGHJ6 | 0:100 | ||
IGHV5-10-1*03 | 602 | 520 | 86.38 | 100.00 | 1.33 | 567 | 499 | IGHJ6 | 99:1 | ||
IGHV5-51*01 | 1189 | 1006 | 84.61 | 100.00 | 2.58 | 1087 | 940 | IGHJ6 | 50:50 | ||
IGHV6-1*01 | 255 | 220 | 86.27 | 100.00 | 0.56 | 240 | 211 | IGHJ6 | 43:57 | ||
IGHV3/OR16-8*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
IGHV7-4-1*02 | 525 | 476 | 90.67 | 100.00 | 1.22 | 499 | 458 | IGHJ6 | 98:2 | ||
Totals | 45440 | 39048 | 85.93 | 1580:-1480 |