Genotype 'P1_I70_S1' (Submission S00038)


Genotype Name	P1_I70_S1
Subject ID	S66
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I70_S1_ogrdbstats.csv
Tool/Settings	Tigger

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4625158	Naive B-Cell repertoire

Record Set	Title
ERR2567243	Illumina MiSeq paired end sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)
IGHV1-6908_C191T*	440	IGHV1-69*02	IGHV1-69*10	0	4	-319G,-320A	0
IGHV3-3004_C201T*	470	IGHV3-30*04	IGHV3-30-3*01	1	2	C201T	0
IGHV4-5908*	652

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
IGHV1-2*04	304	237	77.96	100.00	0.61	282	229	IGHJ6	13:87
IGHV1-3*01	859	738	85.91	100.00	1.89	812	711	IGHJ6	56:44
IGHV1-8*01	485	432	89.07	100.00	1.11	450	404	IGHJ6	0:100
IGHV1-18*01	524	465	88.74	45.00	1.19	488	438	IGHJ6	1:99
IGHV1-18*04	645	584	90.54	55.00	1.50	611	561	IGHJ6	100:0
IGHV1-24*01	352	320	90.91	100.00	0.82	329	300	IGHJ6	69:31
IGHV1-45*02	6	6	100.00	100.00	0.02	6	6	IGHJ6
IGHV1-46*01	1129	984	87.16	100.00	2.52	1051	932	IGHJ6	62:38
IGHV1-58*02	124	114	91.94	100.00	0.29	115	108	IGHJ6	74:26
IGHV1-69*10	832	739	88.82	65.00	1.89	760	691	IGHJ6	99:1
IGHV1-6908_C191T*	440	397	90.23	35.00	1.02	395	364	IGHJ6	0:100
IGHV2-5*01	430	376	87.44	45.00	0.96	408	363	IGHJ6	100:0
IGHV2-5*02	534	459	85.96	55.00	1.18	499	439	IGHJ6	0:100
IGHV2-26*01	358	324	90.50	100.00	0.83	337	314	IGHJ6	57:43
IGHV2-70*12	4	0	0.00	100.00	0.00	2	0	IGHJ6	100:0
IGHV3-7*01	407	325	79.85	64.00	0.83	372	306	IGHJ6	2:98
IGHV3-7*05	229	181	79.04	36.00	0.46	215	173	IGHJ6	100:0
IGHV3-9*01	908	758	83.48	100.00	1.94	810	695	IGHJ6	1:99
IGHV3-11*01	434	371	85.48	57.00	0.95	399	350	IGHJ6	0:100
IGHV3-11*06	328	267	81.40	43.00	0.68	297	248	IGHJ6	100:0
IGHV3-13*01	102	85	83.33	59.00	0.22	94	81	IGHJ6	0:100
IGHV3-13*05	72	64	88.89	41.00	0.16	67	60	IGHJ6	100:0
IGHV3-15*01	543	463	85.27	48.00	1.19	497	431	IGHJ6	100:0
IGHV3-15*07	600	512	85.33	52.00	1.31	547	474	IGHJ6	1:99
IGHV3-20*04	26	19	73.08	100.00	0.05	25	19	IGHJ6	0:100
IGHV3-21*01	2285	1974	86.39	100.00	5.06	2064	1815	IGHJ6	57:43
IGHV3-23*01	2790	2333	83.62	61.00	5.97	2494	2140	IGHJ6	1:99
IGHV3-23*04	1807	1489	82.40	39.00	3.81	1638	1388	IGHJ6	100:0
IGHV3-30-3*01	2977	2456	82.50	100.00	6.29	2697	2280	IGHJ6	64:36
IGHV3-30*18	2884	2404	83.36	86.00	6.16	2634	2241	IGHJ6	68:32
IGHV3-3004_C201T*	470	394	83.83	14.00	1.01	432	374	IGHJ6	1:99
IGHV3-33*06	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV3-38-3*01	3	2	66.67	100.00	0.01	3	2	IGHJ6	100:0
IGHV3-43*01	235	201	85.53	100.00	0.51	211	184	IGHJ6	74:26
IGHV3-48*02	1077	915	84.96	100.00	2.34	994	863	IGHJ6	63:37
IGHV3-49*04	264	219	82.95	61.00	0.56	241	206	IGHJ6	100:0
IGHV3-49*05	172	132	76.74	39.00	0.34	158	129	IGHJ6	0:100
IGHV3-53*01	354	310	87.57	67.00	0.79	324	288	IGHJ6	1:99
IGHV3-53*04	172	141	81.98	33.00	0.36	155	131	IGHJ6	100:0
IGHV3-64*01	180	159	88.33	100.00	0.41	168	151	IGHJ6	65:35
IGHV3-66*02	342	301	88.01	100.00	0.77	297	268	IGHJ6	0:100
IGHV3-71*03	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV3-72*01	92	70	76.09	100.00	0.18	85	67	IGHJ6	45:55
IGHV3-73*01	181	150	82.87	100.00	0.38	158	133	IGHJ6	52:48
IGHV3-74*01	346	292	84.39	100.00	0.75	318	270	IGHJ6	46:54
IGHV3-43D*03	146	126	86.30	100.00	0.32	137	122	IGHJ6	100:0
IGHV3-64D*08	329	276	83.89	100.00	0.71	303	255	IGHJ6	100:0
IGHV4-4*02	427	377	88.29	100.00	0.97	407	364	IGHJ6	2:98
IGHV4-28*01	5	3	60.00	71.00	0.01	4	3	IGHJ6
IGHV4-28*03	1	1	100.00	14.00	0.00	1	1	IGHJ6	0:100
IGHV4-28*06	1	0	0.00	14.00	0.00	1	0	IGHJ6
IGHV4-30-2*01	351	310	88.32	100.00	0.79	331	296	IGHJ6	47:53
IGHV4-30-4*01	765	670	87.58	100.00	1.72	725	643	IGHJ6	56:44
IGHV4-34*01	4894	4348	88.84	100.00	11.14	4465	4061	IGHJ6	46:54
IGHV4-38-2*02	899	778	86.54	100.00	1.99	788	711	IGHJ6	99:1
IGHV4-39*01	1767	1547	87.55	40.00	3.96	1584	1414	IGHJ6	0:100
IGHV4-39*07	2650	2319	87.51	60.00	5.94	2364	2135	IGHJ6	100:0
IGHV4-55*08	2	1	50.00	100.00	0.00	2	1	IGHJ6
IGHV4-59*01	1594	1405	88.14	71.00	3.60	1499	1342	IGHJ6	48:52
IGHV4-5908*	652	570	87.42	29.00	1.46	615	547	IGHJ6	98:2
IGHV4-61*02	1077	933	86.63	100.00	2.39	1003	888	IGHJ6	0:100
IGHV5-10-1*03	602	520	86.38	100.00	1.33	567	499	IGHJ6	99:1
IGHV5-51*01	1189	1006	84.61	100.00	2.58	1087	940	IGHJ6	50:50
IGHV6-1*01	255	220	86.27	100.00	0.56	240	211	IGHJ6	43:57
IGHV3/OR16-8*01	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV7-4-1*02	525	476	90.67	100.00	1.22	499	458	IGHJ6	98:2
Totals	45440	39048	85.93						1580:-1480