Genotype 'P1_I10_S1' (Submission S00038)


Genotype Name	P1_I10_S1
Subject ID	S10
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I10_S1_ogrdbstats.csv
Tool/Settings	Tigger

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4625102	Naive B-Cell repertoire

Record Set	Title
ERR2567187	Illumina MiSeq paired end sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
IGHV1-6908_C191T*	696	IGHV1-69*02	IGHV1-69*04	0	2	-319G,-320A	0
IGHV3-1301_G290A_T300C*	89	IGHV3-13*01	IGHV3-66*01	2	30	G290A,T300C	1	G97E
IGHV3-43D04_G4A*	104	IGHV3-43D*04	IGHV3-43*01	1	4	G4A	1	V2M
IGHV4-38-202_A70G*	825	IGHV4-38-2*01	IGHV4-39*01	0	10	-319G,-320A	0
IGHV4-5908*	515

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
IGHV1-2*04	319	256	80.25	100.00	0.82	300	248	IGHJ6	99:1
IGHV1-3*01	694	604	87.03	100.00	1.94	665	587	IGHJ6	67:33
IGHV1-18*01	584	493	84.42	100.00	1.58	560	478	IGHJ6	0:100
IGHV1-24*01	209	187	89.47	100.00	0.60	206	185	IGHJ6	0:100
IGHV1-45*02	8	7	87.50	100.00	0.02	8	7	IGHJ6	50:50
IGHV1-46*01	1231	1064	86.43	100.00	3.41	1164	1018	IGHJ6	65:35
IGHV1-58*02	96	85	88.54	100.00	0.27	92	83	IGHJ6	54:46
IGHV1-69*04	921	821	89.14	57.00	2.63	874	791	IGHJ6	1:99
IGHV1-6908_C191T*	696	615	88.36	43.00	1.97	657	590	IGHJ6	99:1
IGHV2-5*02	512	445	86.91	100.00	1.43	489	431	IGHJ6	50:50
IGHV2-26*01	173	153	88.44	100.00	0.49	169	151	IGHJ6	0:100
IGHV2-70*15	163	143	87.73	100.00	0.46	162	143	IGHJ6	0:100
IGHV3-7*03	1127	879	77.99	100.00	2.82	1030	838	IGHJ6	57:43
IGHV3-11*06	186	156	83.87	100.00	0.50	178	151	IGHJ6	0:100
IGHV3-1301_G290A_T300C*	89	71	79.78	100.00	0.23	83	68	IGHJ6	0:100
IGHV3-15*07	728	592	81.32	100.00	1.90	681	566	IGHJ6	0:100
IGHV3-20*04	53	39	73.58	100.00	0.13	49	39	IGHJ6	0:100
IGHV3-21*01	619	523	84.49	100.00	1.68	563	492	IGHJ6	1:99
IGHV3-23*01	1834	1500	81.79	100.00	4.81	1690	1418	IGHJ6	0:100
IGHV3-30-3*01	1429	1139	79.71	100.00	3.65	1340	1097	IGHJ6	2:98
IGHV3-30*04	1944	1602	82.41	47.00	5.14	1805	1524	IGHJ6	100:0
IGHV3-30*18	2206	1799	81.55	53.00	5.77	2069	1718	IGHJ6	80:20
IGHV3-33*01	2675	2173	81.23	100.00	6.97	2470	2055	IGHJ6	65:35
IGHV3-35*01	1	1	100.00	100.00	0.00	1	1	IGHJ6
IGHV3-43*01	98	82	83.67	100.00	0.26	92	78	IGHJ6	0:100
IGHV3-48*02	601	488	81.20	26.00	1.56	552	464	IGHJ6	1:99
IGHV3-48*03	1675	1435	85.67	74.00	4.60	1579	1371	IGHJ6	100:0
IGHV3-49*04	412	346	83.98	74.00	1.11	382	325	IGHJ6	99:1
IGHV3-49*05	143	124	86.71	26.00	0.40	139	121	IGHJ6	0:100
IGHV3-52*01	2	2	100.00	100.00	0.01	2	2	IGHJ6
IGHV3-53*02	217	193	88.94	100.00	0.62	206	183	IGHJ6	100:0
IGHV3-64*01	162	134	82.72	100.00	0.43	155	131	IGHJ6	55:45
IGHV3-66*01	632	524	82.91	54.00	1.68	574	485	IGHJ6	3:97
IGHV3-66*02	544	462	84.93	46.00	1.48	489	427	IGHJ6	99:1
IGHV3-72*01	98	74	75.51	100.00	0.24	91	69	IGHJ6	81:19
IGHV3-73*01	210	166	79.05	100.00	0.53	195	160	IGHJ6	56:44
IGHV3-74*01	634	529	83.44	100.00	1.70	587	504	IGHJ6	74:26
IGHV3-43D04_G4A*	104	93	89.42	100.00	0.30	99	89	IGHJ6	100:0
IGHV3-64D*06	284	224	78.87	100.00	0.72	256	212	IGHJ6	4:96
IGHV4-4*02	405	352	86.91	100.00	1.13	387	342	IGHJ6	100:0
IGHV4-28*01	1	1	100.00	33.00	0.00	1	1	IGHJ6
IGHV4-28*04	2	0	0.00	67.00	0.00	2	0	IGHJ6	0:100
IGHV4-30-2*01	284	241	84.86	100.00	0.77	266	230	IGHJ6	54:46
IGHV4-30-4*01	699	596	85.26	100.00	1.91	670	576	IGHJ6	57:43
IGHV4-31*03	1169	1009	86.31	100.00	3.23	1117	973	IGHJ6	60:40
IGHV4-34*01	2886	2485	86.11	100.00	7.97	2657	2352	IGHJ6	51:49
IGHV4-38-202_A70G*	825	709	85.94	100.00	2.27	764	668	IGHJ6	100:0
IGHV4-39*01	1188	1009	84.93	100.00	3.23	1117	966	IGHJ6	1:99
IGHV4-55*08	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV4-59*01	1369	1129	82.47	73.00	3.62	1310	1107	IGHJ6	50:50
IGHV4-5908*	515	427	82.91	27.00	1.37	505	423	IGHJ6	2:98
IGHV4-61*02	1263	1042	82.50	100.00	3.34	1211	1019	IGHJ6	100:0
IGHV1/OR15-4*01	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV4/OR15-8*02	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV1/OR15-9*01	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV5-10-1*03	226	198	87.61	100.00	0.63	221	194	IGHJ6	3:97
IGHV5-51*01	1417	1225	86.45	100.00	3.93	1365	1187	IGHJ6	66:34
IGHV6-1*01	370	318	85.95	100.00	1.02	348	310	IGHJ6	53:47
IGHV7-4-1*02	280	232	82.86	100.00	0.74	263	220	IGHJ6	3:97
IGHV7-81*01	1	1	100.00	100.00	0.00	1	1	IGHJ6
Totals	37217	31197	83.82						1572:-1472