OGRDB

Genotype 'P1_I23_S1' (Submission S00038)


Genotype Name	P1_I23_S1
Subject ID	S23
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I23_S1_ogrdbstats.csv
Tool/Settings	Tigger

Filter Options

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Download

NCBI Information

Sample	Title
SAMEA4625115	Naive B-Cell repertoire

Record Set	Title
ERR2567200	Illumina MiSeq paired end sequencing

Legend:

Allele names in italic are not listed in the reference set.
Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)	Sequence
IGHV4-6101_A41G*	100	IGHV4-61*01	IGHV4-61*01	1	1	A41G	1	K14R

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
IGHV1-2*02	793	701	88.40	70.00	2.43	751	664	IGHJ6	100:0
IGHV1-2*04	344	307	89.24	30.00	1.06	327	292	IGHJ6	0:100
IGHV1-3*01	333	294	88.29	100.00	1.02	320	284	IGHJ6	4:96
IGHV1-8*01	1195	1077	90.13	100.00	3.73	1128	1033	IGHJ6	54:46
IGHV1-18*01	1149	1027	89.38	100.00	3.56	1110	997	IGHJ6	75:25
IGHV1-24*01	251	219	87.25	100.00	0.76	242	213	IGHJ6	83:17
IGHV1-45*02	9	3	33.33	100.00	0.01	5	3	IGHJ6
IGHV1-46*01	272	234	86.03	60.00	0.81	261	227	IGHJ6	9:91
IGHV1-46*03	185	169	91.35	40.00	0.59	178	163	IGHJ6	98:2
IGHV1-58*01	146	130	89.04	100.00	0.45	137	124	IGHJ6	48:52
IGHV1-69*01	2354	2071	87.98	60.00	7.18	2234	1993	IGHJ6	58:42
IGHV1-69-2*01	87	80	91.95	100.00	0.28	82	76	IGHJ6	82:18
IGHV1-69*06	1560	1374	88.08	40.00	4.76	1474	1316	IGHJ6	59:41
IGHV2-5*01	267	243	91.01	37.00	0.84	258	236	IGHJ6	100:0
IGHV2-5*02	455	412	90.55	63.00	1.43	435	400	IGHJ6	0:100
IGHV2-26*01	350	319	91.14	100.00	1.11	335	311	IGHJ6	47:53
IGHV2-70*01	117	103	88.03	63.00	0.36	115	101	IGHJ6	69:31
IGHV2-70*04	69	66	95.65	37.00	0.23	68	65	IGHJ6	43:57
IGHV3-7*01	480	399	83.12	100.00	1.38	468	394	IGHJ6	67:33
IGHV3-9*01	1764	1515	85.88	100.00	5.25	1677	1459	IGHJ6	73:27
IGHV3-11*01	794	659	83.00	100.00	2.28	771	647	IGHJ6	67:33
IGHV3-13*01	211	183	86.73	100.00	0.63	200	177	IGHJ6	65:35
IGHV3-15*01	346	309	89.31	40.00	1.07	339	305	IGHJ6	100:0
IGHV3-15*07	513	441	85.96	60.00	1.53	492	426	IGHJ6	0:100
IGHV3-20*01	31	24	77.42	45.00	0.08	31	24	IGHJ6	100:0
IGHV3-20*04	38	30	78.95	55.00	0.10	38	30	IGHJ6	0:100
IGHV3-21*01	1551	1322	85.24	100.00	4.58	1490	1281	IGHJ6	65:35
IGHV3-23*01	3919	3347	85.40	100.00	11.60	3725	3228	IGHJ6	65:35
IGHV3-30*01	425	371	87.29	45.00	1.29	413	363	IGHJ6	4:96
IGHV3-30*18	517	444	85.88	55.00	1.54	505	440	IGHJ6	100:0
IGHV3-33*01	1127	962	85.36	100.00	3.33	1084	936	IGHJ6	77:23
IGHV3-43*01	29	25	86.21	100.00	0.09	28	25	IGHJ6	100:0
IGHV3-48*01	321	276	85.98	33.00	0.96	314	270	IGHJ6	100:0
IGHV3-48*03	642	538	83.80	67.00	1.86	618	528	IGHJ6	0:100
IGHV3-49*03	106	85	80.19	33.00	0.29	105	85	IGHJ6	100:0
IGHV3-49*04	211	175	82.94	67.00	0.61	201	167	IGHJ6	2:98
IGHV3-52*02	3	3	100.00	100.00	0.01	3	3	IGHJ6
IGHV3-53*02	226	195	86.28	100.00	0.68	217	191	IGHJ6	51:49
IGHV3-64*02	12	11	91.67	92.00	0.04	11	10	IGHJ6	100:0
IGHV3-64*04	1	0	0.00	8.00	0.00	1	0	IGHJ6
IGHV3-66*01	2	0	0.00	50.00	0.00	2	0	IGHJ6
IGHV3-66*04	2	1	50.00	50.00	0.00	2	1	IGHJ6
IGHV3-69-1*01	1	1	100.00	33.00	0.00	1	1	IGHJ6
IGHV3-69-1*02	2	0	0.00	67.00	0.00	2	0	IGHJ6
IGHV3-72*01	32	25	78.12	100.00	0.09	32	25	IGHJ6	100:0
IGHV3-73*02	160	138	86.25	100.00	0.48	152	131	IGHJ6	47:53
IGHV3-74*01	238	203	85.29	100.00	0.70	231	199	IGHJ6	65:35
IGHV3-43D*04	36	30	83.33	100.00	0.10	34	29	IGHJ6	0:100
IGHV4-4*02	413	363	87.89	61.00	1.26	403	355	IGHJ6	0:100
IGHV4-4*07	262	225	85.88	39.00	0.78	261	224	IGHJ6	100:0
IGHV4-28*01	2	2	100.00	50.00	0.01	2	2	IGHJ6
IGHV4-28*02	1	1	100.00	25.00	0.00	1	1	IGHJ6
IGHV4-28*03	1	0	0.00	25.00	0.00	1	0	IGHJ6
IGHV4-30-2*01	142	131	92.25	100.00	0.45	133	124	IGHJ6	100:0
IGHV4-31*01	108	89	82.41	12.00	0.31	106	87	IGHJ6	0:100
IGHV4-31*03	792	702	88.64	88.00	2.43	769	694	IGHJ6	100:0
IGHV4-34*01	4180	3772	90.24	100.00	13.07	3913	3587	IGHJ6	41:59
IGHV4-38-2*01	463	409	88.34	64.00	1.42	441	393	IGHJ6	2:98
IGHV4-38-2*02	260	25	9.62	36.00	0.09	242	25	IGHJ6	0:100
IGHV4-39*01	989	867	87.66	100.00	3.00	930	826	IGHJ6	99:1
IGHV4-55*08	1	1	100.00	100.00	0.00	1	1	IGHJ6
IGHV4-59*01	761	670	88.04	100.00	2.32	743	657	IGHJ6	48:52
IGHV4-61*01	131	115	87.79	57.00	0.40	128	115	IGHJ6	7:93
IGHV4-6101_A41G*	100	91	91.00	43.00	0.32	98	91	IGHJ6	100:0
IGHV5-10-1*02	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV5-51*01	634	492	77.60	74.00	1.70	607	473	IGHJ6	30:70
IGHV5-51*03	223	198	88.79	26.00	0.69	221	197	IGHJ6	100:0
IGHV6-1*01	196	163	83.16	100.00	0.56	187	156	IGHJ6	58:42
IGHV3/OR16-9*01	1	1	100.00	100.00	0.00	1	1	IGHJ6
IGHV3/OR16-12*01	1	1	100.00	100.00	0.00	1	1	IGHJ6
IGHV7-4-1*01	9	1	11.11	100.00	0.00	9	1	IGHJ6	50:50
Totals	33347	28860	86.54						2609:-2509