Genotype 'P4_I12_S1_ogrdb_report' (Submission S00036)


Genotype Name	P4_I12_S1_ogrdb_report
Subject ID	CI13
Locus	TRB
Sequence Type	V
Genotype Filename	P4_I12_S1_ogrdb_report.csv
Tool/Settings	P4_Sequence_protocol

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4973436	HCV B-Cell

Record Set	Title
ERR2843399	Illumina MiSeq sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
TRBV20-102_319AGAGA323*	1370	TRBV20-1*02	TRBV20-1*01	0	1	-319A,-320G,-321A,-322G,-323A	1	-107R
TRBV12-501_C28G*	50	TRBV12-5*01	TRBV12-5*01	1	1	C28G	1	H10D
TRBV5-502_322TTGG325*	180	TRBV5-5*02	TRBV5-5*01	0	1	-322T,-323T,-324G,-325G	1	-108L
**TRBV5-601_T284G***	162	TRBV5-6*01	TRBV5-6*01	1	1	T284G	1	L95W
TRBV6-2301*	1251

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
TRBV10-1*01	210	165	78.57	100.00	0.59	196	160	TRBJ1-6	40:60
TRBV20-1*01	1643	1041	63.36	55.00	3.71	1407	1002	TRBJ1-6	100:0
TRBV20-102_319AGAGA323*	1370	946	69.05	45.00	3.37	1246	923	TRBJ1-6	0:100
TRBV10-2*01	95	68	71.58	100.00	0.24	91	68	TRBJ1-6	100:0
TRBV10-3*01	511	368	72.02	54.00	1.31	466	355	TRBJ1-6	0:100
TRBV10-3*02	428	327	76.40	46.00	1.17	395	314	TRBJ1-6	100:0
TRBV1*01	17	10	58.82	100.00	0.04	16	9	TRBJ1-6
TRBV13*01	369	195	52.85	100.00	0.70	292	170	TRBJ1-6	86:14
TRBV14*01	567	417	73.54	100.00	1.49	495	389	TRBJ1-6	36:64
TRBV15*02	424	309	72.88	100.00	1.10	388	302	TRBJ1-6	18:82
TRBV16*01	38	30	78.95	100.00	0.11	36	30	TRBJ1-6	80:20
TRBV18*01	877	674	76.85	100.00	2.40	815	644	TRBJ1-6	53:47
TRBV19*01	972	702	72.22	100.00	2.50	927	680	TRBJ1-6	47:53
TRBV2*01	2321	1340	57.73	100.00	4.78	1427	1066	TRBJ1-6	41:59
TRBV27*01	1889	1339	70.88	100.00	4.77	1662	1290	TRBJ1-6	61:39
TRBV28*01	1276	867	67.95	100.00	3.09	1017	795	TRBJ1-6	90:10
TRBV30*01	477	272	57.02	100.00	0.97	438	255	TRBJ1-6	92:8
TRBV9*01	1097	800	72.93	100.00	2.85	1002	782	TRBJ1-6	48:52
TRBV11-1*01	74	47	63.51	100.00	0.17	67	46	TRBJ1-6
TRBV21-1*01	263	215	81.75	59.00	0.77	247	207	TRBJ1-6	100:0
TRBV21-1*02	185	156	84.32	41.00	0.56	172	150	TRBJ1-6	0:100
TRBV11-2*01	894	678	75.84	100.00	2.42	828	654	TRBJ1-6	48:52
TRBV11-3*01	124	100	80.65	100.00	0.36	115	94	TRBJ1-6	100:0
TRBV12-1*01	3	2	66.67	100.00	0.01	3	2	TRBJ1-6
TRBV12-2*01	21	16	76.19	100.00	0.06	20	16	TRBJ1-6	50:50
TRBV12-3*01	1819	1327	72.95	100.00	4.73	1668	1293	TRBJ1-6	61:39
TRBV12-4*01	767	562	73.27	100.00	2.00	696	543	TRBJ1-6	31:69
TRBV12-5*01	155	122	78.71	76.00	0.43	146	119	TRBJ1-6	0:100
TRBV12-501_C28G*	50	36	72.00	24.00	0.13	48	36	TRBJ1-6
TRBV23-1*01	84	46	54.76	100.00	0.16	80	43	TRBJ1-6	50:50
TRBV3-1*01	1449	1158	79.92	100.00	4.13	1338	1122	TRBJ1-6	54:46
TRBV3-2*01	26	19	73.08	100.00	0.07	25	19	TRBJ1-6	0:100
TRBV24-1*01	442	289	65.38	71.00	1.03	360	266	TRBJ1-6	100:0
TRBV4-1*01	927	730	78.75	100.00	2.60	833	692	TRBJ1-6	35:65
TRBV24-1*02	177	126	71.19	29.00	0.45	155	119	TRBJ1-6	0:100
TRBV4-2*01	335	262	78.21	100.00	0.93	325	259	TRBJ1-6	80:20
TRBV4-3*01	1035	738	71.30	100.00	2.63	918	705	TRBJ1-6	0:100
TRBV25-1*01	392	295	75.26	100.00	1.05	357	293	TRBJ1-6	52:48
TRBV5-1*01	2754	1945	70.62	100.00	6.93	2472	1872	TRBJ1-6	49:51
TRBV5-3*01	14	9	64.29	100.00	0.03	14	9	TRBJ1-6
TRBV5-4*01	205	144	70.24	100.00	0.51	194	141	TRBJ1-6	50:50
TRBV5-5*01	192	144	75.00	52.00	0.51	187	143	TRBJ1-6	100:0
TRBV5-502_322TTGG325*	180	135	75.00	48.00	0.48	169	134	TRBJ1-6	0:100
TRBV5-6*01	295	206	69.83	65.00	0.73	266	197	TRBJ1-6	0:100
**TRBV5-601_T284G***	162	122	75.31	35.00	0.43	151	118	TRBJ1-6	100:0
TRBV5-7*01	7	5	71.43	100.00	0.02	7	5	TRBJ1-6
TRBV5-8*01	58	41	70.69	100.00	0.15	51	37	TRBJ1-6	50:50
TRBV6-1*01	851	634	74.50	100.00	2.26	799	622	TRBJ1-6	43:57
TRBV6-4*01	208	164	78.85	100.00	0.58	181	154	TRBJ1-6	43:57
TRBV6-5*01	1192	866	72.65	100.00	3.09	1083	836	TRBJ1-6	25:75
TRBV6-6*01	416	293	70.43	53.00	1.04	379	282	TRBJ1-6	0:100
TRBV6-6*02	376	265	70.48	47.00	0.94	345	260	TRBJ1-6	100:0
TRBV6-7*01	8	6	75.00	100.00	0.02	8	6	TRBJ1-6
TRBV6-8*01	7	4	57.14	100.00	0.01	7	4	TRBJ1-6
TRBV6-9*01	2	2	100.00	100.00	0.01	2	2	TRBJ1-6
TRBV6-2301*	1251	836	66.83	100.00	2.98	1076	788	TRBJ1-6	24:76
TRBV7-1*01	2	2	100.00	100.00	0.01	2	2	TRBJ1-6
TRBV7-2*01	1604	1022	63.72	78.00	3.64	1246	927	TRBJ1-6	0:100
TRBV7-2*02	448	338	75.45	22.00	1.20	417	329	TRBJ1-6	100:0
TRBV7-3*01	439	308	70.16	86.00	1.10	393	293	TRBJ1-6	93:7
TRBV7-3*02	70	54	77.14	14.00	0.19	65	50	TRBJ1-6	0:100
TRBV7-4*01	14	7	50.00	100.00	0.02	13	7	TRBJ1-6	100:0
TRBV7-6*01	377	286	75.86	100.00	1.02	317	265	TRBJ1-6	33:67
TRBV7-7*01	104	79	75.96	100.00	0.28	93	74	TRBJ1-6
TRBV7-8*01	560	383	68.39	100.00	1.37	505	364	TRBJ1-6	42:58
TRBV7-9*01	633	467	73.78	44.00	1.66	568	455	TRBJ1-6	0:100
TRBV7-9*03	797	579	72.65	56.00	2.06	707	554	TRBJ1-6	100:0
TRBV29-1*01	2789	1912	68.56	100.00	6.82	2407	1821	TRBJ1-6	43:57
Totals	39818	28052	70.45						1857:-1757