Genotype 'P1_I60_S1_ogrdb_report' (Submission S00037)
NCBI Information
| Sample | Title |
|---|---|
| SAMEA4625149 | Naive B-Cell repertoire |
| Record Set | Title |
|---|---|
| ERR2567234 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-69*08_C191T | 968 | IGHV1-69*02 | IGHV1-69*01 | 0 | 7 | -319G,-320A | 0 | ||
| IGHV4-39*01_G315A | 1424 | IGHV4-39*01 | IGHV4-39*01 | 1 | 1 | G315A | 0 | ||
| IGHV4-39*02_C258G | 199 | IGHV4-39*01 | IGHV4-39*01 | 1 | 1 | C319G | 0 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*02 | 1438 | 1179 | 81.99 | 83.00 | 2.53 | 1296 | 1091 | ||||
| IGHV1-2*04 | 293 | 253 | 86.35 | 17.00 | 0.54 | 267 | 235 | ||||
| IGHV1-3*05 | 298 | 237 | 79.53 | 100.00 | 0.51 | 276 | 222 | ||||
| IGHV1-8*01 | 1738 | 1493 | 85.90 | 100.00 | 3.20 | 1555 | 1377 | ||||
| IGHV1-18*01 | 2023 | 1704 | 84.23 | 100.00 | 3.65 | 1872 | 1597 | ||||
| IGHV1-24*01 | 923 | 797 | 86.35 | 100.00 | 1.71 | 863 | 755 | ||||
| IGHV1-45*02 | 10 | 7 | 70.00 | 100.00 | 0.02 | 10 | 7 | ||||
| IGHV1-46*01 | 1325 | 1095 | 82.64 | 100.00 | 2.35 | 1222 | 1033 | ||||
| IGHV1-58*01 | 107 | 93 | 86.92 | 56.00 | 0.20 | 100 | 88 | ||||
| IGHV1-58*02 | 85 | 76 | 89.41 | 44.00 | 0.16 | 82 | 74 | ||||
| IGHV1-69*01 | 2691 | 2324 | 86.36 | 74.00 | 4.98 | 2410 | 2137 | ||||
| IGHV1-69*08_C191T | 968 | 848 | 87.60 | 26.00 | 1.82 | 867 | 779 | ||||
| IGHV2-5*01 | 483 | 389 | 80.54 | 100.00 | 0.83 | 445 | 367 | ||||
| IGHV2-26*01 | 384 | 314 | 81.77 | 100.00 | 0.67 | 360 | 301 | ||||
| IGHV2-70*01 | 170 | 140 | 82.35 | 100.00 | 0.30 | 161 | 135 | ||||
| IGHV2-70D*14 | 2 | 0 | 0.00 | 100.00 | 0.00 | 2 | 0 | ||||
| IGHV3-7*01 | 1309 | 1007 | 76.93 | 100.00 | 2.16 | 1213 | 949 | ||||
| IGHV3-9*01 | 3331 | 2651 | 79.59 | 100.00 | 5.68 | 2939 | 2415 | ||||
| IGHV3-11*01 | 1287 | 975 | 75.76 | 100.00 | 2.09 | 1186 | 919 | ||||
| IGHV3-13*01 | 281 | 229 | 81.49 | 100.00 | 0.49 | 258 | 214 | ||||
| IGHV3-15*01 | 748 | 598 | 79.95 | 43.00 | 1.28 | 671 | 548 | ||||
| IGHV3-15*07 | 994 | 776 | 78.07 | 57.00 | 1.66 | 925 | 739 | ||||
| IGHV3-20*01 | 101 | 78 | 77.23 | 73.00 | 0.17 | 84 | 68 | ||||
| IGHV3-20*04 | 38 | 27 | 71.05 | 27.00 | 0.06 | 35 | 25 | ||||
| IGHV3-21*01 | 2271 | 1877 | 82.65 | 100.00 | 4.02 | 2023 | 1717 | ||||
| IGHV3-23*01 | 6105 | 4697 | 76.94 | 100.00 | 10.07 | 5439 | 4306 | ||||
| IGHV3-30-3*01 | 8 | 2 | 25.00 | 100.00 | 0.00 | 8 | 2 | ||||
| IGHV3-30*18 | 3205 | 2514 | 78.44 | 100.00 | 5.39 | 2917 | 2340 | ||||
| IGHV3-33*01 | 2957 | 2275 | 76.94 | 100.00 | 4.88 | 2635 | 2091 | ||||
| IGHV3-35*01 | 2 | 1 | 50.00 | 100.00 | 0.00 | 2 | 1 | ||||
| IGHV3-43*01 | 174 | 120 | 68.97 | 100.00 | 0.26 | 155 | 110 | ||||
| IGHV3-48*02 | 1163 | 941 | 80.91 | 100.00 | 2.02 | 1064 | 881 | ||||
| IGHV3-49*05 | 536 | 409 | 76.31 | 100.00 | 0.88 | 488 | 381 | ||||
| IGHV3-53*01 | 1313 | 1028 | 78.29 | 100.00 | 2.20 | 1181 | 940 | ||||
| IGHV3-64*01 | 121 | 89 | 73.55 | 100.00 | 0.19 | 112 | 83 | ||||
| IGHV3-66*02 | 585 | 459 | 78.46 | 100.00 | 0.98 | 522 | 423 | ||||
| IGHV3-69-1*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| IGHV3-72*01 | 92 | 58 | 63.04 | 100.00 | 0.12 | 84 | 55 | ||||
| IGHV3-73*01 | 86 | 65 | 75.58 | 62.00 | 0.14 | 78 | 61 | ||||
| IGHV3-73*02 | 52 | 47 | 90.38 | 38.00 | 0.10 | 48 | 45 | ||||
| IGHV3-74*01 | 660 | 501 | 75.91 | 100.00 | 1.07 | 619 | 479 | ||||
| IGHV4-4*02 | 583 | 478 | 81.99 | 50.00 | 1.02 | 542 | 453 | ||||
| IGHV4-4*07 | 585 | 482 | 82.39 | 50.00 | 1.03 | 541 | 448 | ||||
| IGHV4-28*01 | 17 | 17 | 100.00 | 100.00 | 0.04 | 16 | 16 | ||||
| IGHV4-30-2*01 | 499 | 411 | 82.36 | 100.00 | 0.88 | 466 | 390 | ||||
| IGHV4-31*03 | 1396 | 1179 | 84.46 | 100.00 | 2.53 | 1310 | 1118 | ||||
| IGHV4-34*01 | 5133 | 4344 | 84.63 | 100.00 | 9.31 | 4494 | 3947 | ||||
| IGHV4-38-2*02 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| IGHV4-39*01 | 1373 | 1112 | 80.99 | 46.00 | 2.38 | 1192 | 994 | ||||
| IGHV4-39*01_G315A | 1424 | 1151 | 80.83 | 48.00 | 2.47 | 1266 | 1048 | ||||
| IGHV4-39*02_C258G | 199 | 161 | 80.90 | 7.00 | 0.35 | 178 | 144 | ||||
| IGHV4-59*01 | 1811 | 1476 | 81.50 | 100.00 | 3.16 | 1702 | 1407 | ||||
| IGHV4-61*01 | 197 | 148 | 75.13 | 11.00 | 0.32 | 187 | 143 | ||||
| IGHV4-61*02 | 1664 | 1356 | 81.49 | 89.00 | 2.91 | 1551 | 1293 | ||||
| IGHV5-51*01 | 2069 | 1701 | 82.21 | 100.00 | 3.65 | 1892 | 1578 | ||||
| IGHV6-1*01 | 316 | 254 | 80.38 | 100.00 | 0.54 | 281 | 232 | ||||
| IGHV3/OR16-8*01 | 1 | 1 | 100.00 | 100.00 | 0.00 | 1 | 1 | ||||
| IGHV7-4-1*01 | 17 | 13 | 76.47 | 100.00 | 0.03 | 17 | 13 | ||||
| Totals | 57643 | 46657 | 80.94 |