OGRDB

Genotype 'P1_I41_S1_ogrdb_report' (Submission S00037)


Genotype Name	P1_I41_S1_ogrdb_report
Subject ID	S38
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I41_S1_ogrdb_report.csv
Tool/Settings	P1_Sequence_protocol

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NCBI Information

Sample	Title
SAMEA4625130	Naive B-Cell repertoire

Record Set	Title
ERR2567215	Illumina MiSeq paired end sequencing

Legend:

Allele names in italic are not listed in the reference set.
Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)	Sequence
IGHV4-30-401_A70G_A107G*	388	IGHV4-30-4*01	IGHV4-31*03	2	6	A70G,A107G	2	T24A,D36G
IGHV4-5908*	550

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
IGHV1-2*02	1285	1156	89.96	74.00	3.26	1172	1073	IGHJ6	0:100
IGHV1-2*04	446	403	90.36	26.00	1.14	423	384	IGHJ6	100:0
IGHV1-3*01	285	242	84.91	100.00	0.68	273	237	IGHJ6	100:0
IGHV1-18*04	1439	1300	90.34	100.00	3.66	1344	1231	IGHJ6	42:58
IGHV1-24*01	449	401	89.31	100.00	1.13	416	378	IGHJ6	58:42
IGHV1-45*02	6	6	100.00	75.00	0.02	5	5	IGHJ6
IGHV1-45*03	2	2	100.00	25.00	0.01	2	2	IGHJ6
IGHV1-46*01	1097	985	89.79	100.00	2.78	1018	931	IGHJ6	42:58
IGHV1-58*01	146	138	94.52	61.00	0.39	135	129	IGHJ6	0:100
IGHV1-58*02	95	85	89.47	39.00	0.24	93	85	IGHJ6	100:0
IGHV1-69*01	2890	2578	89.20	71.00	7.27	2633	2402	IGHJ6	0:100
IGHV1-69*04	1177	1059	89.97	29.00	2.99	1080	992	IGHJ6	99:1
IGHV2-5*02	297	262	88.22	100.00	0.74	283	253	IGHJ6	45:55
IGHV2-26*01	301	253	84.05	100.00	0.71	289	247	IGHJ6	4:96
IGHV2-70*01	95	86	90.53	37.00	0.24	92	85	IGHJ6	0:100
IGHV2-70*15	165	147	89.09	63.00	0.41	162	145	IGHJ6	100:0
IGHV3-7*03	532	440	82.71	100.00	1.24	495	415	IGHJ6	36:64
IGHV3-11*06	941	811	86.18	100.00	2.29	883	770	IGHJ6	23:77
IGHV3-13*05	132	110	83.33	100.00	0.31	120	105	IGHJ6	33:67
IGHV3-15*01	1116	981	87.90	100.00	2.77	1041	936	IGHJ6	44:56
IGHV3-21*01	1538	1345	87.45	100.00	3.79	1414	1263	IGHJ6	49:51
IGHV3-23*01	3114	2687	86.29	100.00	7.57	2813	2490	IGHJ6	26:74
IGHV3-30-3*01	983	825	83.93	100.00	2.33	896	770	IGHJ6	2:98
IGHV3-30*04	875	743	84.91	44.00	2.09	819	705	IGHJ6	100:0
IGHV3-30*18	1121	974	86.89	56.00	2.75	1049	915	IGHJ6	32:68
IGHV3-33*01	664	538	81.02	100.00	1.52	591	491	IGHJ6	0:100
IGHV3-35*01	1	1	100.00	100.00	0.00	1	1	IGHJ6
IGHV3-43*01	80	67	83.75	17.00	0.19	77	65	IGHJ6	0:100
IGHV3-43*02	397	345	86.90	83.00	0.97	381	333	IGHJ6	99:1
IGHV3-48*02	397	336	84.63	40.00	0.95	371	319	IGHJ6	3:97
IGHV3-48*03	607	519	85.50	60.00	1.46	580	502	IGHJ6	99:1
IGHV3-49*04	209	194	92.82	41.00	0.55	198	186	IGHJ6	100:0
IGHV3-49*05	303	264	87.13	59.00	0.74	283	250	IGHJ6	1:99
IGHV3-52*01	2	2	100.00	100.00	0.01	2	2	IGHJ6
IGHV3-53*01	223	188	84.30	57.00	0.53	199	175	IGHJ6	0:100
IGHV3-53*04	168	150	89.29	43.00	0.42	159	143	IGHJ6	98:2
IGHV3-64*01	45	43	95.56	79.00	0.12	44	42	IGHJ6	100:0
IGHV3-64*02	12	11	91.67	21.00	0.03	9	9	IGHJ6	0:100
IGHV3-66*01	325	273	84.00	100.00	0.77	298	256	IGHJ6	100:0
IGHV3-72*01	55	42	76.36	100.00	0.12	50	38	IGHJ6	35:65
IGHV3-73*02	345	289	83.77	100.00	0.81	313	270	IGHJ6	57:43
IGHV3-74*01	365	318	87.12	100.00	0.90	345	305	IGHJ6	55:45
IGHV3-64D*06	391	331	84.65	100.00	0.93	358	309	IGHJ6	32:68
IGHV3-NL1*01	1	0	0.00	100.00	0.00	1	0	IGHJ6	0:100
IGHV4-4*02	332	289	87.05	48.00	0.81	319	285	IGHJ6	100:0
IGHV4-4*07	356	310	87.08	52.00	0.87	334	300	IGHJ6	0:100
IGHV4-28*01	2	2	100.00	25.00	0.01	2	2	IGHJ6
IGHV4-28*03	1	1	100.00	12.00	0.00	1	1	IGHJ6
IGHV4-28*07	5	2	40.00	62.00	0.01	5	2	IGHJ6	100:0
IGHV4-30-2*01	449	412	91.76	100.00	1.16	418	390	IGHJ6	30:70
IGHV4-30-401_A70G_A107G*	388	337	86.86	100.00	0.95	367	324	IGHJ6	0:100
IGHV4-31*03	594	525	88.38	100.00	1.48	544	486	IGHJ6	0:100
IGHV4-34*01	4505	4084	90.65	100.00	11.51	4024	3736	IGHJ6	25:75
IGHV4-38-2*02	2	0	0.00	100.00	0.00	2	0	IGHJ6	100:0
IGHV4-39*01	2969	2598	87.50	100.00	7.32	2666	2414	IGHJ6	40:60
IGHV4-59*01	1527	1343	87.95	74.00	3.79	1469	1306	IGHJ6	46:54
IGHV4-5908*	550	466	84.73	26.00	1.31	522	448	IGHJ6	99:1
IGHV4-61*01	177	160	90.40	100.00	0.45	168	152	IGHJ6	0:100
IGHV1/OR15-2*01	1	1	100.00	100.00	0.00	1	1	IGHJ6
IGHV5-10-1*03	1175	1059	90.13	100.00	2.99	1098	1000	IGHJ6	38:62
IGHV5-51*01	1968	1760	89.43	100.00	4.96	1809	1648	IGHJ6	41:59
IGHV6-1*01	214	182	85.05	100.00	0.51	203	175	IGHJ6	57:43
IGHV7-4-1*01	18	13	72.22	100.00	0.04	17	13	IGHJ6	100:0
Totals	40350	35474	87.92						1339:-1239