Genotype 'P1_I10_S1_ogrdb_report' (Submission S00037)
NCBI Information
| Sample | Title |
|---|---|
| SAMEA4625102 | Naive B-Cell repertoire |
| Record Set | Title |
|---|---|
| ERR2567187 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-69*08_C191T | 696 | IGHV1-69*02 | IGHV1-69*04 | 0 | 2 | -319G,-320A | 0 | ||
| IGHV3-13*01_G290A_T300C | 89 | IGHV3-13*01 | IGHV3-66*01 | 2 | 30 | G290A,T300C | 1 | G97E | |
| IGHV3-43D*04_G4A | 104 | IGHV3-43D*04 | IGHV3-43*01 | 1 | 4 | G4A | 1 | V2M | |
| IGHV4-38-2*02_A70G | 825 | IGHV4-38-2*01 | IGHV4-39*01 | 0 | 10 | -319G,-320A | 0 | ||
| IGHV4-59*08 | 515 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*04 | 319 | 256 | 80.25 | 100.00 | 0.82 | 300 | 248 | IGHJ6 | 99:1 | ||
| IGHV1-3*01 | 694 | 604 | 87.03 | 100.00 | 1.94 | 665 | 587 | IGHJ6 | 67:33 | ||
| IGHV1-18*01 | 584 | 493 | 84.42 | 100.00 | 1.58 | 560 | 478 | IGHJ6 | 0:100 | ||
| IGHV1-24*01 | 209 | 187 | 89.47 | 100.00 | 0.60 | 206 | 185 | IGHJ6 | 0:100 | ||
| IGHV1-45*02 | 8 | 7 | 87.50 | 100.00 | 0.02 | 8 | 7 | IGHJ6 | 50:50 | ||
| IGHV1-46*01 | 1231 | 1064 | 86.43 | 100.00 | 3.41 | 1164 | 1018 | IGHJ6 | 65:35 | ||
| IGHV1-58*02 | 96 | 85 | 88.54 | 100.00 | 0.27 | 92 | 83 | IGHJ6 | 54:46 | ||
| IGHV1-69*04 | 921 | 821 | 89.14 | 57.00 | 2.63 | 874 | 791 | IGHJ6 | 1:99 | ||
| IGHV1-69*08_C191T | 696 | 615 | 88.36 | 43.00 | 1.97 | 657 | 590 | IGHJ6 | 99:1 | ||
| IGHV2-5*02 | 512 | 445 | 86.91 | 100.00 | 1.43 | 489 | 431 | IGHJ6 | 50:50 | ||
| IGHV2-26*01 | 173 | 153 | 88.44 | 100.00 | 0.49 | 169 | 151 | IGHJ6 | 0:100 | ||
| IGHV2-70*15 | 163 | 143 | 87.73 | 100.00 | 0.46 | 162 | 143 | IGHJ6 | 0:100 | ||
| IGHV3-7*03 | 1127 | 879 | 77.99 | 100.00 | 2.82 | 1030 | 838 | IGHJ6 | 57:43 | ||
| IGHV3-11*06 | 186 | 156 | 83.87 | 100.00 | 0.50 | 178 | 151 | IGHJ6 | 0:100 | ||
| IGHV3-13*01_G290A_T300C | 89 | 71 | 79.78 | 100.00 | 0.23 | 83 | 68 | IGHJ6 | 0:100 | ||
| IGHV3-15*07 | 728 | 592 | 81.32 | 100.00 | 1.90 | 681 | 566 | IGHJ6 | 0:100 | ||
| IGHV3-20*04 | 53 | 39 | 73.58 | 100.00 | 0.13 | 49 | 39 | IGHJ6 | 0:100 | ||
| IGHV3-21*01 | 619 | 523 | 84.49 | 100.00 | 1.68 | 563 | 492 | IGHJ6 | 1:99 | ||
| IGHV3-23*01 | 1834 | 1500 | 81.79 | 100.00 | 4.81 | 1690 | 1418 | IGHJ6 | 0:100 | ||
| IGHV3-30-3*01 | 1429 | 1139 | 79.71 | 100.00 | 3.65 | 1340 | 1097 | IGHJ6 | 2:98 | ||
| IGHV3-30*04 | 1944 | 1602 | 82.41 | 47.00 | 5.14 | 1805 | 1524 | IGHJ6 | 100:0 | ||
| IGHV3-30*18 | 2206 | 1799 | 81.55 | 53.00 | 5.77 | 2069 | 1718 | IGHJ6 | 80:20 | ||
| IGHV3-33*01 | 2675 | 2173 | 81.23 | 100.00 | 6.97 | 2470 | 2055 | IGHJ6 | 65:35 | ||
| IGHV3-35*01 | 1 | 1 | 100.00 | 100.00 | 0.00 | 1 | 1 | IGHJ6 | |||
| IGHV3-43*01 | 98 | 82 | 83.67 | 100.00 | 0.26 | 92 | 78 | IGHJ6 | 0:100 | ||
| IGHV3-48*02 | 601 | 488 | 81.20 | 26.00 | 1.56 | 552 | 464 | IGHJ6 | 1:99 | ||
| IGHV3-48*03 | 1675 | 1435 | 85.67 | 74.00 | 4.60 | 1579 | 1371 | IGHJ6 | 100:0 | ||
| IGHV3-49*04 | 412 | 346 | 83.98 | 74.00 | 1.11 | 382 | 325 | IGHJ6 | 99:1 | ||
| IGHV3-49*05 | 143 | 124 | 86.71 | 26.00 | 0.40 | 139 | 121 | IGHJ6 | 0:100 | ||
| IGHV3-52*01 | 2 | 2 | 100.00 | 100.00 | 0.01 | 2 | 2 | IGHJ6 | |||
| IGHV3-53*02 | 217 | 193 | 88.94 | 100.00 | 0.62 | 206 | 183 | IGHJ6 | 100:0 | ||
| IGHV3-64*01 | 162 | 134 | 82.72 | 100.00 | 0.43 | 155 | 131 | IGHJ6 | 55:45 | ||
| IGHV3-66*01 | 632 | 524 | 82.91 | 54.00 | 1.68 | 574 | 485 | IGHJ6 | 3:97 | ||
| IGHV3-66*02 | 544 | 462 | 84.93 | 46.00 | 1.48 | 489 | 427 | IGHJ6 | 99:1 | ||
| IGHV3-72*01 | 98 | 74 | 75.51 | 100.00 | 0.24 | 91 | 69 | IGHJ6 | 81:19 | ||
| IGHV3-73*01 | 210 | 166 | 79.05 | 100.00 | 0.53 | 195 | 160 | IGHJ6 | 56:44 | ||
| IGHV3-74*01 | 634 | 529 | 83.44 | 100.00 | 1.70 | 587 | 504 | IGHJ6 | 74:26 | ||
| IGHV3-43D*04_G4A | 104 | 93 | 89.42 | 100.00 | 0.30 | 99 | 89 | IGHJ6 | 100:0 | ||
| IGHV3-64D*06 | 284 | 224 | 78.87 | 100.00 | 0.72 | 256 | 212 | IGHJ6 | 4:96 | ||
| IGHV4-4*02 | 405 | 352 | 86.91 | 100.00 | 1.13 | 387 | 342 | IGHJ6 | 100:0 | ||
| IGHV4-28*01 | 1 | 1 | 100.00 | 33.00 | 0.00 | 1 | 1 | IGHJ6 | |||
| IGHV4-28*04 | 2 | 0 | 0.00 | 67.00 | 0.00 | 2 | 0 | IGHJ6 | 0:100 | ||
| IGHV4-30-2*01 | 284 | 241 | 84.86 | 100.00 | 0.77 | 266 | 230 | IGHJ6 | 54:46 | ||
| IGHV4-30-4*01 | 699 | 596 | 85.26 | 100.00 | 1.91 | 670 | 576 | IGHJ6 | 57:43 | ||
| IGHV4-31*03 | 1169 | 1009 | 86.31 | 100.00 | 3.23 | 1117 | 973 | IGHJ6 | 60:40 | ||
| IGHV4-34*01 | 2886 | 2485 | 86.11 | 100.00 | 7.97 | 2657 | 2352 | IGHJ6 | 51:49 | ||
| IGHV4-38-2*02_A70G | 825 | 709 | 85.94 | 100.00 | 2.27 | 764 | 668 | IGHJ6 | 100:0 | ||
| IGHV4-39*01 | 1188 | 1009 | 84.93 | 100.00 | 3.23 | 1117 | 966 | IGHJ6 | 1:99 | ||
| IGHV4-55*08 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV4-59*01 | 1369 | 1129 | 82.47 | 73.00 | 3.62 | 1310 | 1107 | IGHJ6 | 50:50 | ||
| IGHV4-59*08 | 515 | 427 | 82.91 | 27.00 | 1.37 | 505 | 423 | IGHJ6 | 2:98 | ||
| IGHV4-61*02 | 1263 | 1042 | 82.50 | 100.00 | 3.34 | 1211 | 1019 | IGHJ6 | 100:0 | ||
| IGHV1/OR15-4*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV4/OR15-8*02 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV1/OR15-9*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV5-10-1*03 | 226 | 198 | 87.61 | 100.00 | 0.63 | 221 | 194 | IGHJ6 | 3:97 | ||
| IGHV5-51*01 | 1417 | 1225 | 86.45 | 100.00 | 3.93 | 1365 | 1187 | IGHJ6 | 66:34 | ||
| IGHV6-1*01 | 370 | 318 | 85.95 | 100.00 | 1.02 | 348 | 310 | IGHJ6 | 53:47 | ||
| IGHV7-4-1*02 | 280 | 232 | 82.86 | 100.00 | 0.74 | 263 | 220 | IGHJ6 | 3:97 | ||
| IGHV7-81*01 | 1 | 1 | 100.00 | 100.00 | 0.00 | 1 | 1 | IGHJ6 | |||
| Totals | 37217 | 31197 | 83.82 | 1572:-1472 |