Genotype 'P1_I39_S1_ogrdb_report' (Submission S00037)


Genotype Name	P1_I39_S1_ogrdb_report
Subject ID	S36
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I39_S1_ogrdb_report.csv
Tool/Settings	P1_Sequence_protocol

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4625128	Naive B-Cell repertoire

Record Set	Title
ERR2567213	Illumina MiSeq paired end sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)	Sequence
IGHV4-5901_G267A*	60	IGHV4-59*01	IGHV4-59*01	1	1	G267A	0
IGHV4-6102_A234G*	135	IGHV4-61*02	IGHV4-4*07	1	4	A234G	1	I78M

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
IGHV1-2*02	361	287	79.50	100.00	3.86	350	285	IGHJ6	70:30
IGHV1-3*02	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV1-8*01	295	264	89.49	100.00	3.55	289	262	IGHJ6	59:41
IGHV1-18*01	319	269	84.33	100.00	3.62	312	265	IGHJ6	83:17
IGHV1-24*01	138	120	86.96	100.00	1.62	135	119	IGHJ6	62:38
IGHV1-45*02	1	1	100.00	100.00	0.01	1	1	IGHJ6
IGHV1-46*01	199	169	84.92	100.00	2.27	194	168	IGHJ6	87:13
IGHV1-58*01	35	25	71.43	100.00	0.34	35	25	IGHJ6	82:18
IGHV1-69*01	726	626	86.23	100.00	8.43	701	612	IGHJ6	68:32
IGHV2-5*01	107	96	89.72	100.00	1.29	107	96	IGHJ6	79:21
IGHV2-26*01	45	42	93.33	100.00	0.57	44	41	IGHJ6	62:38
IGHV2-70*01	38	33	86.84	100.00	0.44	38	33	IGHJ6	62:38
IGHV3-7*01	280	198	70.71	100.00	2.66	267	195	IGHJ6	73:27
IGHV3-9*01	675	484	71.70	100.00	6.51	639	476	IGHJ6	84:16
IGHV3-11*01	282	184	65.25	100.00	2.48	270	181	IGHJ6	67:33
IGHV3-13*01	71	58	81.69	100.00	0.78	68	58	IGHJ6	90:10
IGHV3-15*01	248	195	78.63	100.00	2.62	235	193	IGHJ6	67:33
IGHV3-20*01	41	31	75.61	100.00	0.42	39	29	IGHJ6	89:11
IGHV3-21*01	524	397	75.76	100.00	5.34	496	389	IGHJ6	71:29
IGHV3-23*01	1370	1009	73.65	100.00	13.58	1286	990	IGHJ6	66:34
IGHV3-30-3*01	200	144	72.00	100.00	1.94	189	139	IGHJ6	0:100
IGHV3-30*18	425	280	65.88	100.00	3.77	397	275	IGHJ6	62:38
IGHV3-33*01	514	354	68.87	100.00	4.76	483	348	IGHJ6	63:37
IGHV3-43*01	70	52	74.29	100.00	0.70	67	52	IGHJ6	81:19
IGHV3-48*01	66	51	77.27	27.00	0.69	64	51	IGHJ6	0:100
IGHV3-48*02	182	133	73.08	73.00	1.79	171	130	IGHJ6	100:0
IGHV3-49*03	23	15	65.22	35.00	0.20	21	14	IGHJ6	0:100
IGHV3-49*05	42	32	76.19	65.00	0.43	41	32	IGHJ6	100:0
IGHV3-53*02	69	59	85.51	100.00	0.79	67	58	IGHJ6	71:29
IGHV3-64*02	1	1	100.00	100.00	0.01	1	1	IGHJ6
IGHV3-72*01	18	12	66.67	100.00	0.16	14	11	IGHJ6	33:67
IGHV3-73*02	44	36	81.82	100.00	0.48	43	35	IGHJ6	78:22
IGHV3-74*01	58	41	70.69	100.00	0.55	54	40	IGHJ6	90:10
IGHV4-4*07	153	120	78.43	100.00	1.62	147	118	IGHJ6	70:30
IGHV4-30-2*01	19	13	68.42	100.00	0.17	19	13	IGHJ6	0:100
IGHV4-30-4*01	45	33	73.33	100.00	0.44	44	33	IGHJ6	0:100
IGHV4-31*03	318	242	76.10	100.00	3.26	306	237	IGHJ6	62:38
IGHV4-34*01	406	334	82.27	100.00	4.50	385	329	IGHJ6	74:26
IGHV4-39*01	530	443	83.58	100.00	5.96	508	436	IGHJ6	69:31
IGHV4-59*01	133	104	78.20	69.00	1.40	129	103	IGHJ6	100:0
IGHV4-5901_G267A*	60	43	71.67	31.00	0.58	60	43	IGHJ6	0:100
IGHV4-61*01	44	32	72.73	25.00	0.43	43	32	IGHJ6	100:0
IGHV4-6102_A234G*	135	104	77.04	75.00	1.40	131	104	IGHJ6	0:100
IGHV5-51*01	228	181	79.39	88.00	2.44	224	181	IGHJ6	81:19
IGHV5-51*03	32	30	93.75	12.00	0.40	32	30	IGHJ6	0:100
IGHV6-1*01	59	53	89.83	100.00	0.71	57	52	IGHJ6	79:21
Totals	9630	7430	77.15						1499:-1399