Genotype NameP4_I9_S1_ogrdb_report
Subject IDC9
LocusTRB
Sequence TypeV
Genotype FilenameP4_I9_S1_ogrdb_report.csv
Tool/SettingsP4_Sequence_protocol
Download
SampleTitle
SAMEA4973430HCV B-Cell
Record SetTitle
ERR2843393Illumina MiSeq sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name
Sequences
Closest Reference
Closest in Host
NT Diffs (reference)
NT Diffs (host)
NT Substs (reference)
AA Diffs (reference)
AA Substs (reference)
Sequence
TRBV20-1*02_319AGAGA3231268TRBV20-1*02TRBV20-1*0101-319A,-320G,-321A,-322G,-323A1-107R
TRBV10-3*03_313GCCATCAGTGAGTC326327TRBV10-3*03TRBV10-3*0102-313G,-314C,-315C,-316A,-317T,-318C,-319A,-320G,-321T,-322G,-323A,-324G,-325T,-326C4-105A,-106I,-107S,-108E
TRBV12-5*01_C28G_T140A52TRBV12-5*01TRBV12-5*0122C28G,T140A2H10D,M47K
TRBV5-5*02_322TTGG325318TRBV5-5*02TRBV5-7*0109-322T,-323T,-324G,-325G1-108L
TRBV6-23*01913
TRBV7-7*01_C315T66TRBV7-7*01TRBV7-7*0111C315T0

Genotype

Allele name
Sequences
Unmutated Seqs
Unmutated % within allele
Unmutated UMIs
Allelic %
Total unmutated population (%)
Unique CDR3s
Unique CDR3s with unmutated
Haplotyping Gene
Haplotyping Ratio
Sequence
TRBV10-1*011036866.02100.000.309766TRBJ1-6 0:100
TRBV20-1*011845111860.6059.004.9216501085TRBJ1-6 100:0
TRBV20-1*02_319AGAGA323126876360.1741.003.361127737TRBJ1-6 2:98
TRBV10-2*01956770.53100.000.297658TRBJ1-6 0:100
TRBV10-3*0143529367.3657.001.29378278TRBJ1-6 94:6
TRBV10-3*03_313GCCATCAGTGAGTC32632725778.5943.001.13291239TRBJ1-6 0:100
TRBV1*017571.43100.000.0275TRBJ1-6 100:0
TRBV13*0137318549.60100.000.81327178TRBJ1-6 33:67
TRBV14*0155738969.84100.001.71472360TRBJ1-6 24:76
TRBV15*0256637666.43100.001.66497356TRBJ1-6 56:44
TRBV16*01211571.43100.000.071914TRBJ1-6 100:0
TRBV18*0169650872.99100.002.24620475TRBJ1-6 32:68
TRBV19*0187060169.08100.002.65805575TRBJ1-6 27:73
TRBV2*011651111567.53100.004.9114191045TRBJ1-6 45:55
TRBV27*01140895467.76100.004.201167882TRBJ1-6 50:50
TRBV28*01104074171.25100.003.26905699TRBJ1-6 80:20
TRBV30*0198342743.44100.001.88785372TRBJ1-6 27:73
TRBV9*0198366167.24100.002.91841622TRBJ1-6 32:68
TRBV11-1*011449163.19100.000.4012990TRBJ1-6 0:100
TRBV21-1*0121416778.0459.000.74188162TRBJ1-6 100:0
TRBV21-1*0214911577.1841.000.51138114TRBJ1-6 0:100
TRBV11-2*0160145175.04100.001.99546426TRBJ1-6 41:59
TRBV11-3*01534279.2528.000.185039TRBJ1-6 100:0
TRBV11-3*041399366.9172.000.4113191TRBJ1-6 0:100
TRBV12-1*015360.00100.000.0153TRBJ1-6
TRBV12-2*01181161.11100.000.051811TRBJ1-6 0:100
TRBV12-3*01129488068.01100.003.871166848TRBJ1-6 38:62
TRBV12-4*0151035970.39100.001.58469344TRBJ1-6 24:76
TRBV12-5*011027270.5966.000.329572TRBJ1-6 0:100
TRBV12-5*01_C28G_T140A523975.0034.000.174939TRBJ1-6
TRBV23-1*0121911050.23100.000.48198105TRBJ1-6 50:50
TRBV3-1*01128597475.80100.004.291142933TRBJ1-6 24:76
TRBV3-2*02301963.33100.000.082919TRBJ1-6
TRBV24-1*0127918666.6777.000.82254181TRBJ1-6
TRBV4-1*01101576174.98100.003.35902734TRBJ1-6 72:28
TRBV24-1*02825668.2923.000.257655TRBJ1-6 0:100
TRBV4-2*0172748766.99100.002.14621450TRBJ1-6 57:43
TRBV4-3*01101357756.96100.002.54645476TRBJ1-6 100:0
TRBV25-1*0131324979.55100.001.10286238TRBJ1-6 33:67
TRBV5-1*012012130965.06100.005.7617861256TRBJ1-6 36:64
TRBV5-3*016583.33100.000.0265TRBJ1-6
TRBV5-4*0118512969.73100.000.57171124TRBJ1-6 40:60
TRBV5-5*02_322TTGG32531821567.61100.000.95260198TRBJ1-6 40:60
TRBV5-6*0149832865.86100.001.44418311TRBJ1-6 67:33
TRBV5-7*013266.67100.000.0132TRBJ1-6
TRBV5-8*01482347.92100.000.104222TRBJ1-6 0:100
TRBV6-1*0148432166.32100.001.41441308TRBJ1-6 35:65
TRBV6-4*011238770.73100.000.3811182TRBJ1-6 0:100
TRBV6-5*0180253266.33100.002.34741507TRBJ1-6 49:51
TRBV6-6*0156837866.55100.001.66448338TRBJ1-6 25:75
TRBV6-7*0115853.33100.000.04158TRBJ1-6 0:100
TRBV6-8*01200.00100.000.0020TRBJ1-6
TRBV6-9*019444.44100.000.0294TRBJ1-6 0:100
TRBV6-23*0191357462.87100.002.53800546TRBJ1-6 73:27
TRBV7-1*0122100.00100.000.0122TRBJ1-6
TRBV7-2*0199962962.9678.002.77868599TRBJ1-6 92:8
TRBV7-2*0227918967.7422.000.83256183TRBJ1-6 0:100
TRBV7-3*0160836059.21100.001.58492327TRBJ1-6 45:55
TRBV7-4*01151066.67100.000.041410TRBJ1-6
TRBV7-6*0139028873.85100.001.27352282TRBJ1-6 20:80
TRBV7-7*01483470.8342.000.154433TRBJ1-6
TRBV7-7*01_C315T663756.0658.000.164633TRBJ1-6 0:100
TRBV7-8*0168043163.38100.001.90547393TRBJ1-6 36:64
TRBV7-9*0164043668.1247.001.92590423TRBJ1-6 100:0
TRBV7-9*0373149167.1753.002.16658478TRBJ1-6 0:100
TRBV29-1*012590161062.16100.007.0921371516TRBJ1-6 65:35
Totals345062271765.831262:-1162