Genotype 'P4_I9_S1_ogrdb_report' (Submission S00036)


Genotype Name	P4_I9_S1_ogrdb_report
Subject ID	C9
Locus	TRB
Sequence Type	V
Genotype Filename	P4_I9_S1_ogrdb_report.csv
Tool/Settings	P4_Sequence_protocol

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4973430	HCV B-Cell

Record Set	Title
ERR2843393	Illumina MiSeq sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
TRBV20-102_319AGAGA323*	1268	TRBV20-1*02	TRBV20-1*01	0	1	-319A,-320G,-321A,-322G,-323A	1	-107R
TRBV10-303_313GCCATCAGTGAGTC326*	327	TRBV10-3*03	TRBV10-3*01	0	2	-313G,-314C,-315C,-316A,-317T,-318C,-319A,-320G,-321T,-322G,-323A,-324G,-325T,-326C	4	-105A,-106I,-107S,-108E
TRBV12-501_C28G_T140A*	52	TRBV12-5*01	TRBV12-5*01	2	2	C28G,T140A	2	H10D,M47K
TRBV5-502_322TTGG325*	318	TRBV5-5*02	TRBV5-7*01	0	9	-322T,-323T,-324G,-325G	1	-108L
TRBV6-2301*	913
**TRBV7-701_C315T***	66	TRBV7-7*01	TRBV7-7*01	1	1	C315T	0

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
TRBV10-1*01	103	68	66.02	100.00	0.30	97	66	TRBJ1-6	0:100
TRBV20-1*01	1845	1118	60.60	59.00	4.92	1650	1085	TRBJ1-6	100:0
TRBV20-102_319AGAGA323*	1268	763	60.17	41.00	3.36	1127	737	TRBJ1-6	2:98
TRBV10-2*01	95	67	70.53	100.00	0.29	76	58	TRBJ1-6	0:100
TRBV10-3*01	435	293	67.36	57.00	1.29	378	278	TRBJ1-6	94:6
TRBV10-303_313GCCATCAGTGAGTC326*	327	257	78.59	43.00	1.13	291	239	TRBJ1-6	0:100
TRBV1*01	7	5	71.43	100.00	0.02	7	5	TRBJ1-6	100:0
TRBV13*01	373	185	49.60	100.00	0.81	327	178	TRBJ1-6	33:67
TRBV14*01	557	389	69.84	100.00	1.71	472	360	TRBJ1-6	24:76
TRBV15*02	566	376	66.43	100.00	1.66	497	356	TRBJ1-6	56:44
TRBV16*01	21	15	71.43	100.00	0.07	19	14	TRBJ1-6	100:0
TRBV18*01	696	508	72.99	100.00	2.24	620	475	TRBJ1-6	32:68
TRBV19*01	870	601	69.08	100.00	2.65	805	575	TRBJ1-6	27:73
TRBV2*01	1651	1115	67.53	100.00	4.91	1419	1045	TRBJ1-6	45:55
TRBV27*01	1408	954	67.76	100.00	4.20	1167	882	TRBJ1-6	50:50
TRBV28*01	1040	741	71.25	100.00	3.26	905	699	TRBJ1-6	80:20
TRBV30*01	983	427	43.44	100.00	1.88	785	372	TRBJ1-6	27:73
TRBV9*01	983	661	67.24	100.00	2.91	841	622	TRBJ1-6	32:68
TRBV11-1*01	144	91	63.19	100.00	0.40	129	90	TRBJ1-6	0:100
TRBV21-1*01	214	167	78.04	59.00	0.74	188	162	TRBJ1-6	100:0
TRBV21-1*02	149	115	77.18	41.00	0.51	138	114	TRBJ1-6	0:100
TRBV11-2*01	601	451	75.04	100.00	1.99	546	426	TRBJ1-6	41:59
TRBV11-3*01	53	42	79.25	28.00	0.18	50	39	TRBJ1-6	100:0
TRBV11-3*04	139	93	66.91	72.00	0.41	131	91	TRBJ1-6	0:100
TRBV12-1*01	5	3	60.00	100.00	0.01	5	3	TRBJ1-6
TRBV12-2*01	18	11	61.11	100.00	0.05	18	11	TRBJ1-6	0:100
TRBV12-3*01	1294	880	68.01	100.00	3.87	1166	848	TRBJ1-6	38:62
TRBV12-4*01	510	359	70.39	100.00	1.58	469	344	TRBJ1-6	24:76
TRBV12-5*01	102	72	70.59	66.00	0.32	95	72	TRBJ1-6	0:100
TRBV12-501_C28G_T140A*	52	39	75.00	34.00	0.17	49	39	TRBJ1-6
TRBV23-1*01	219	110	50.23	100.00	0.48	198	105	TRBJ1-6	50:50
TRBV3-1*01	1285	974	75.80	100.00	4.29	1142	933	TRBJ1-6	24:76
TRBV3-2*02	30	19	63.33	100.00	0.08	29	19	TRBJ1-6
TRBV24-1*01	279	186	66.67	77.00	0.82	254	181	TRBJ1-6
TRBV4-1*01	1015	761	74.98	100.00	3.35	902	734	TRBJ1-6	72:28
TRBV24-1*02	82	56	68.29	23.00	0.25	76	55	TRBJ1-6	0:100
TRBV4-2*01	727	487	66.99	100.00	2.14	621	450	TRBJ1-6	57:43
TRBV4-3*01	1013	577	56.96	100.00	2.54	645	476	TRBJ1-6	100:0
TRBV25-1*01	313	249	79.55	100.00	1.10	286	238	TRBJ1-6	33:67
TRBV5-1*01	2012	1309	65.06	100.00	5.76	1786	1256	TRBJ1-6	36:64
TRBV5-3*01	6	5	83.33	100.00	0.02	6	5	TRBJ1-6
TRBV5-4*01	185	129	69.73	100.00	0.57	171	124	TRBJ1-6	40:60
TRBV5-502_322TTGG325*	318	215	67.61	100.00	0.95	260	198	TRBJ1-6	40:60
TRBV5-6*01	498	328	65.86	100.00	1.44	418	311	TRBJ1-6	67:33
TRBV5-7*01	3	2	66.67	100.00	0.01	3	2	TRBJ1-6
TRBV5-8*01	48	23	47.92	100.00	0.10	42	22	TRBJ1-6	0:100
TRBV6-1*01	484	321	66.32	100.00	1.41	441	308	TRBJ1-6	35:65
TRBV6-4*01	123	87	70.73	100.00	0.38	111	82	TRBJ1-6	0:100
TRBV6-5*01	802	532	66.33	100.00	2.34	741	507	TRBJ1-6	49:51
TRBV6-6*01	568	378	66.55	100.00	1.66	448	338	TRBJ1-6	25:75
TRBV6-7*01	15	8	53.33	100.00	0.04	15	8	TRBJ1-6	0:100
TRBV6-8*01	2	0	0.00	100.00	0.00	2	0	TRBJ1-6
TRBV6-9*01	9	4	44.44	100.00	0.02	9	4	TRBJ1-6	0:100
TRBV6-2301*	913	574	62.87	100.00	2.53	800	546	TRBJ1-6	73:27
TRBV7-1*01	2	2	100.00	100.00	0.01	2	2	TRBJ1-6
TRBV7-2*01	999	629	62.96	78.00	2.77	868	599	TRBJ1-6	92:8
TRBV7-2*02	279	189	67.74	22.00	0.83	256	183	TRBJ1-6	0:100
TRBV7-3*01	608	360	59.21	100.00	1.58	492	327	TRBJ1-6	45:55
TRBV7-4*01	15	10	66.67	100.00	0.04	14	10	TRBJ1-6
TRBV7-6*01	390	288	73.85	100.00	1.27	352	282	TRBJ1-6	20:80
TRBV7-7*01	48	34	70.83	42.00	0.15	44	33	TRBJ1-6
**TRBV7-701_C315T***	66	37	56.06	58.00	0.16	46	33	TRBJ1-6	0:100
TRBV7-8*01	680	431	63.38	100.00	1.90	547	393	TRBJ1-6	36:64
TRBV7-9*01	640	436	68.12	47.00	1.92	590	423	TRBJ1-6	100:0
TRBV7-9*03	731	491	67.17	53.00	2.16	658	478	TRBJ1-6	0:100
TRBV29-1*01	2590	1610	62.16	100.00	7.09	2137	1516	TRBJ1-6	65:35
Totals	34506	22717	65.83						1262:-1162