Genotype 'P4_I7_S1_ogrdb_report' (Submission S00036)


Genotype Name	P4_I7_S1_ogrdb_report
Subject ID	C7
Locus	TRB
Sequence Type	V
Genotype Filename	P4_I7_S1_ogrdb_report.csv
Tool/Settings	P4_Sequence_protocol

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4973428	HCV B-Cell

Record Set	Title
ERR2843391	Illumina MiSeq sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
TRBV20-102_319AGAGA323*	3854	TRBV20-1*02	TRBV29-1*01	0	89	-319A,-320G,-321A,-322G,-323A	1	-107R
**TRBV1502_G275A***	199	TRBV15*02	TRBV15*02	1	1	G275A	1	R92H
TRBV5-502_322TTGG325*	210	TRBV5-5*02	TRBV5-5*01	0	1	-322T,-323T,-324G,-325G	1	-108L
TRBV6-2301*	1344

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
TRBV10-1*01	231	167	72.29	100.00	0.46	188	153	TRBJ1-6	40:60
TRBV20-102_319AGAGA323*	3854	2641	68.53	100.00	7.30	3510	2551	TRBJ1-6	44:56
TRBV10-2*01	215	151	70.23	100.00	0.42	197	144	TRBJ1-6	43:57
TRBV10-3*01	1097	799	72.84	100.00	2.21	1006	775	TRBJ1-6	48:52
TRBV1*01	9	6	66.67	100.00	0.02	8	5	TRBJ1-6
TRBV13*01	1308	693	52.98	100.00	1.92	544	411	TRBJ1-6	29:71
TRBV14*01	770	598	77.66	100.00	1.65	645	542	TRBJ1-6	26:74
TRBV15*02	307	218	71.01	61.00	0.60	280	211	TRBJ1-6	0:100
**TRBV1502_G275A***	199	142	71.36	39.00	0.39	183	137	TRBJ1-6	100:0
TRBV16*01	41	32	78.05	100.00	0.09	41	32	TRBJ1-6	0:100
TRBV18*01	822	606	73.72	100.00	1.68	716	554	TRBJ1-6	28:72
TRBV19*01	1412	1005	71.18	100.00	2.78	1288	943	TRBJ1-6	20:80
TRBV2*01	1697	1292	76.13	100.00	3.57	1513	1208	TRBJ1-6	43:57
TRBV27*01	1823	1420	77.89	100.00	3.93	1688	1366	TRBJ1-6	46:54
TRBV28*01	1617	1243	76.87	100.00	3.44	1450	1192	TRBJ1-6	83:17
TRBV30*01	719	371	51.60	100.00	1.03	652	349	TRBJ1-6	97:3
TRBV9*01	1354	1042	76.96	100.00	2.88	1253	1016	TRBJ1-6	49:51
TRBV11-1*01	106	73	68.87	100.00	0.20	100	72	TRBJ1-6	100:0
TRBV21-1*02	364	285	78.30	100.00	0.79	336	276	TRBJ1-6	40:60
TRBV11-2*01	602	473	78.57	56.00	1.31	551	448	TRBJ1-6	5:95
TRBV11-2*03	470	354	75.32	44.00	0.98	433	341	TRBJ1-6	100:0
TRBV11-3*01	127	98	77.17	100.00	0.27	122	97	TRBJ1-6	67:33
TRBV12-1*01	7	6	85.71	100.00	0.02	7	6	TRBJ1-6
TRBV12-2*01	27	20	74.07	100.00	0.06	26	19	TRBJ1-6	33:67
TRBV12-3*01	1697	1252	73.78	100.00	3.46	1521	1186	TRBJ1-6	41:59
TRBV12-4*01	1035	748	72.27	100.00	2.07	925	711	TRBJ1-6	36:64
TRBV12-5*01	348	270	77.59	100.00	0.75	324	261	TRBJ1-6	67:33
TRBV23-1*01	90	50	55.56	100.00	0.14	89	50	TRBJ1-6	50:50
TRBV3-1*01	2198	1728	78.62	100.00	4.78	1999	1636	TRBJ1-6	35:65
TRBV3-2*01	147	62	42.18	100.00	0.17	29	20	TRBJ1-6	0:100
TRBV24-1*01	583	416	71.36	76.00	1.15	539	405	TRBJ1-6	100:0
TRBV4-1*01	2489	1896	76.18	100.00	5.24	2123	1758	TRBJ1-6	34:66
TRBV24-1*02	181	137	75.69	24.00	0.38	170	133	TRBJ1-6	0:100
TRBV4-2*01	1026	716	69.79	100.00	1.98	861	670	TRBJ1-6	17:83
TRBV4-3*01	953	709	74.40	100.00	1.96	841	669	TRBJ1-6	0:100
TRBV25-1*01	1077	619	57.47	100.00	1.71	503	425	TRBJ1-6	48:52
TRBV5-1*01	3625	2597	71.64	100.00	7.18	3299	2513	TRBJ1-6	46:54
TRBV5-3*01	18	10	55.56	100.00	0.03	17	10	TRBJ1-6
TRBV5-4*01	298	221	74.16	100.00	0.61	266	206	TRBJ1-6	0:100
TRBV5-5*01	213	164	77.00	50.00	0.45	205	161	TRBJ1-6	100:0
TRBV5-502_322TTGG325*	210	167	79.52	50.00	0.46	198	161	TRBJ1-6	0:100
TRBV5-6*01	831	563	67.75	100.00	1.56	648	490	TRBJ1-6	59:41
TRBV5-7*01	6	4	66.67	100.00	0.01	6	4	TRBJ1-6
TRBV5-8*01	56	45	80.36	100.00	0.12	55	44	TRBJ1-6	20:80
TRBV6-1*01	1255	906	72.19	100.00	2.50	1149	869	TRBJ1-6	47:53
TRBV6-4*01	165	126	76.36	100.00	0.35	146	116	TRBJ1-6	86:14
TRBV6-5*01	1467	972	66.26	100.00	2.69	1232	874	TRBJ1-6	20:80
TRBV6-6*01	535	407	76.07	55.00	1.13	487	391	TRBJ1-6	0:100
TRBV6-6*02	436	332	76.15	45.00	0.92	391	312	TRBJ1-6	100:0
TRBV6-7*01	17	14	82.35	100.00	0.04	16	14	TRBJ1-6	50:50
TRBV6-8*01	14	10	71.43	100.00	0.03	12	10	TRBJ1-6	0:100
TRBV6-9*01	7	2	28.57	100.00	0.01	6	1	TRBJ1-6
TRBV6-2301*	1344	990	73.66	100.00	2.74	1247	950	TRBJ1-6	20:80
TRBV7-1*01	2	1	50.00	100.00	0.00	2	1	TRBJ1-6
TRBV7-2*01	1773	1131	63.79	74.00	3.13	1325	996	TRBJ1-6	2:98
TRBV7-2*02	611	429	70.21	26.00	1.19	554	408	TRBJ1-6	100:0
TRBV7-3*01	425	242	56.94	100.00	0.67	363	230	TRBJ1-6	83:17
TRBV7-4*01	16	11	68.75	100.00	0.03	13	10	TRBJ1-6
TRBV7-6*01	516	394	76.36	100.00	1.09	447	357	TRBJ1-6	30:70
TRBV7-7*01	119	90	75.63	100.00	0.25	104	82	TRBJ1-6	100:0
TRBV7-8*01	748	529	70.72	100.00	1.46	670	499	TRBJ1-6	62:38
TRBV7-9*01	1792	1250	69.75	100.00	3.46	1664	1207	TRBJ1-6	30:70
TRBV29-1*01	3164	2229	70.45	100.00	6.16	2785	2126	TRBJ1-6	57:43
Totals	50665	36174	71.4						1492:-1392