Genotype 'P4_I31_S1_ogrdb_report' (Submission S00036)
| Sample | Title |
|---|---|
| SAMEA4973454 | HCV B-Cell |
| Record Set | Title |
|---|---|
| ERR2843417 | Illumina MiSeq sequencing |
Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| TRBV10-1*02_G274T | 57 | TRBV10-1*02 | TRBV10-3*01 | 1 | 37 | G274T | 1 | E92* | |
| TRBV10-3*03_313GCCATCAGTGAGTC326 | 289 | TRBV10-3*03 | TRBV10-3*01 | 0 | 2 | -313G,-314C,-315C,-316A,-317T,-318C,-319A,-320G,-321T,-322G,-323A,-324G,-325T,-326C | 4 | -105A,-106I,-107S,-108E | |
| TRBV14*02_322CAAGA326 | 152 | TRBV14*02 | TRBV14*01 | 0 | 1 | -322C,-323A,-324A,-325G,-326A | 1 | -108Q | |
| TRBV19*01_A24G | 193 | TRBV19*01 | TRBV19*01 | 1 | 1 | A24G | 0 | ||
| TRBV12-4*01_C87T | 279 | TRBV12-4*01 | TRBV12-4*01 | 1 | 1 | C87T | 0 | ||
| TRBV12-5*01_C28G_T140A | 43 | TRBV12-5*01 | TRBV12-5*01 | 2 | 2 | C28G,T140A | 2 | H10D,M47K | |
| TRBV6-9*01_A303G | 8 | TRBV6-9*01 | TRBV6-9*01 | 1 | 1 | A303G | 0 | ||
| TRBV6-23*01 | 1134 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TRBV20-1*01 | 1167 | 814 | 69.75 | 48.00 | 4.20 | 1011 | 753 | TRBJ1-6 | 0:100 | ||
| TRBV20-1*05 | 1247 | 838 | 67.20 | 52.00 | 4.32 | 1039 | 777 | TRBJ1-6 | 100:0 | ||
| TRBV10-1*02_G274T | 57 | 48 | 84.21 | 100.00 | 0.25 | 37 | 31 | TRBJ1-6 | 0:100 | ||
| TRBV10-2*01 | 44 | 30 | 68.18 | 100.00 | 0.15 | 39 | 28 | TRBJ1-6 | 0:100 | ||
| TRBV10-3*01 | 391 | 273 | 69.82 | 58.00 | 1.41 | 346 | 257 | TRBJ1-6 | 0:100 | ||
| TRBV10-3*03_313GCCATCAGTGAGTC326 | 289 | 232 | 80.28 | 42.00 | 1.20 | 269 | 229 | TRBJ1-6 | 100:0 | ||
| TRBV1*01 | 10 | 7 | 70.00 | 100.00 | 0.04 | 7 | 5 | TRBJ1-6 | |||
| TRBV13*01 | 140 | 84 | 60.00 | 100.00 | 0.43 | 122 | 75 | TRBJ1-6 | 50:50 | ||
| TRBV14*01 | 545 | 264 | 48.44 | 78.00 | 1.36 | 194 | 136 | TRBJ1-6 | 0:100 | ||
| TRBV14*02_322CAAGA326 | 152 | 117 | 76.97 | 22.00 | 0.60 | 135 | 105 | TRBJ1-6 | 100:0 | ||
| TRBV15*02 | 420 | 270 | 64.29 | 100.00 | 1.39 | 310 | 226 | TRBJ1-6 | 38:62 | ||
| TRBV16*01 | 33 | 25 | 75.76 | 100.00 | 0.13 | 27 | 21 | TRBJ1-6 | 12:88 | ||
| TRBV18*01 | 480 | 363 | 75.62 | 100.00 | 1.87 | 417 | 322 | TRBJ1-6 | 30:70 | ||
| TRBV19*01 | 171 | 116 | 67.84 | 47.00 | 0.60 | 153 | 108 | TRBJ1-6 | 0:100 | ||
| TRBV19*01_A24G | 193 | 147 | 76.17 | 53.00 | 0.76 | 170 | 135 | TRBJ1-6 | 100:0 | ||
| TRBV2*01 | 671 | 470 | 70.04 | 100.00 | 2.42 | 580 | 428 | TRBJ1-6 | 23:77 | ||
| TRBV27*01 | 769 | 542 | 70.48 | 100.00 | 2.80 | 649 | 499 | TRBJ1-6 | 49:51 | ||
| TRBV28*01 | 510 | 356 | 69.80 | 100.00 | 1.84 | 447 | 332 | TRBJ1-6 | 10:90 | ||
| TRBV30*01 | 658 | 345 | 52.43 | 100.00 | 1.78 | 414 | 256 | TRBJ1-6 | 47:53 | ||
| TRBV9*01 | 573 | 409 | 71.38 | 100.00 | 2.11 | 522 | 393 | TRBJ1-6 | 20:80 | ||
| TRBV11-1*01 | 79 | 59 | 74.68 | 100.00 | 0.30 | 74 | 58 | TRBJ1-6 | 0:100 | ||
| TRBV21-1*01 | 347 | 277 | 79.83 | 100.00 | 1.43 | 306 | 255 | TRBJ1-6 | 36:64 | ||
| TRBV11-2*01 | 190 | 143 | 75.26 | 54.00 | 0.74 | 156 | 125 | TRBJ1-6 | 100:0 | ||
| TRBV11-2*03 | 165 | 117 | 70.91 | 46.00 | 0.60 | 144 | 106 | TRBJ1-6 | 0:100 | ||
| TRBV11-3*01 | 31 | 23 | 74.19 | 32.00 | 0.12 | 31 | 23 | TRBJ1-6 | 0:100 | ||
| TRBV11-3*04 | 66 | 44 | 66.67 | 68.00 | 0.23 | 64 | 44 | TRBJ1-6 | |||
| TRBV12-2*01 | 23 | 14 | 60.87 | 100.00 | 0.07 | 19 | 11 | TRBJ1-6 | 0:100 | ||
| TRBV12-3*01 | 2232 | 1146 | 51.34 | 100.00 | 5.91 | 1161 | 895 | TRBJ1-6 | 31:69 | ||
| TRBV12-4*01 | 167 | 120 | 71.86 | 37.00 | 0.62 | 133 | 107 | TRBJ1-6 | 0:100 | ||
| TRBV12-4*01_C87T | 279 | 203 | 72.76 | 63.00 | 1.05 | 255 | 196 | TRBJ1-6 | 100:0 | ||
| TRBV12-5*01 | 69 | 51 | 73.91 | 62.00 | 0.26 | 62 | 49 | TRBJ1-6 | 100:0 | ||
| TRBV12-5*01_C28G_T140A | 43 | 35 | 81.40 | 38.00 | 0.18 | 42 | 35 | TRBJ1-6 | |||
| TRBV23-1*01 | 51 | 26 | 50.98 | 100.00 | 0.13 | 45 | 26 | TRBJ1-6 | |||
| TRBV3-1*01 | 961 | 696 | 72.42 | 100.00 | 3.59 | 837 | 646 | TRBJ1-6 | 23:77 | ||
| TRBV3-2*01 | 25 | 15 | 60.00 | 60.00 | 0.08 | 21 | 14 | TRBJ1-6 | 100:0 | ||
| TRBV3-2*02 | 17 | 11 | 64.71 | 40.00 | 0.06 | 17 | 11 | TRBJ1-6 | 0:100 | ||
| TRBV24-1*01 | 542 | 362 | 66.79 | 100.00 | 1.87 | 463 | 338 | TRBJ1-6 | 67:33 | ||
| TRBV4-1*01 | 249 | 200 | 80.32 | 100.00 | 1.03 | 211 | 178 | TRBJ1-6 | 25:75 | ||
| TRBV4-2*01 | 720 | 481 | 66.81 | 100.00 | 2.48 | 464 | 374 | TRBJ1-6 | 0:100 | ||
| TRBV4-3*01 | 1138 | 781 | 68.63 | 100.00 | 4.03 | 831 | 665 | TRBJ1-6 | 46:54 | ||
| TRBV25-1*01 | 209 | 157 | 75.12 | 100.00 | 0.81 | 178 | 144 | TRBJ1-6 | 56:44 | ||
| TRBV5-1*01 | 3358 | 1499 | 44.64 | 100.00 | 7.73 | 1389 | 988 | TRBJ1-6 | 44:56 | ||
| TRBV5-3*01 | 4 | 2 | 50.00 | 100.00 | 0.01 | 4 | 2 | TRBJ1-6 | |||
| TRBV5-4*01 | 118 | 82 | 69.49 | 100.00 | 0.42 | 111 | 79 | TRBJ1-6 | 0:100 | ||
| TRBV5-5*01 | 228 | 171 | 75.00 | 100.00 | 0.88 | 202 | 163 | TRBJ1-6 | 20:80 | ||
| TRBV5-6*01 | 269 | 186 | 69.14 | 100.00 | 0.96 | 227 | 169 | TRBJ1-6 | 18:82 | ||
| TRBV5-7*01 | 1 | 1 | 100.00 | 100.00 | 0.01 | 1 | 1 | TRBJ1-6 | |||
| TRBV5-8*01 | 19 | 12 | 63.16 | 100.00 | 0.06 | 19 | 12 | TRBJ1-6 | |||
| TRBV6-1*01 | 485 | 340 | 70.10 | 100.00 | 1.75 | 388 | 296 | TRBJ1-6 | 68:32 | ||
| TRBV6-4*01 | 283 | 190 | 67.14 | 100.00 | 0.98 | 184 | 146 | TRBJ1-6 | 43:57 | ||
| TRBV6-5*01 | 734 | 526 | 71.66 | 100.00 | 2.71 | 662 | 498 | TRBJ1-6 | 44:56 | ||
| TRBV6-6*02 | 1273 | 726 | 57.03 | 100.00 | 3.74 | 564 | 424 | TRBJ1-6 | 10:90 | ||
| TRBV6-7*01 | 12 | 11 | 91.67 | 100.00 | 0.06 | 12 | 11 | TRBJ1-6 | |||
| TRBV6-8*01 | 5 | 3 | 60.00 | 100.00 | 0.02 | 5 | 3 | TRBJ1-6 | |||
| TRBV6-9*01 | 2 | 1 | 50.00 | 20.00 | 0.01 | 1 | 1 | TRBJ1-6 | |||
| TRBV6-9*01_A303G | 8 | 6 | 75.00 | 80.00 | 0.03 | 7 | 5 | TRBJ1-6 | 100:0 | ||
| TRBV6-23*01 | 1134 | 780 | 68.78 | 100.00 | 4.02 | 965 | 710 | TRBJ1-6 | 40:60 | ||
| TRBV7-2*01 | 1947 | 1294 | 66.46 | 100.00 | 6.67 | 1616 | 1189 | TRBJ1-6 | 29:71 | ||
| TRBV7-3*01 | 472 | 329 | 69.70 | 100.00 | 1.70 | 433 | 311 | TRBJ1-6 | 41:59 | ||
| TRBV7-4*01 | 21 | 16 | 76.19 | 100.00 | 0.08 | 18 | 13 | TRBJ1-6 | |||
| TRBV7-6*01 | 164 | 124 | 75.61 | 100.00 | 0.64 | 136 | 112 | TRBJ1-6 | 38:62 | ||
| TRBV7-7*01 | 90 | 61 | 67.78 | 100.00 | 0.31 | 78 | 54 | TRBJ1-6 | |||
| TRBV7-8*01 | 372 | 255 | 68.55 | 100.00 | 1.32 | 292 | 216 | TRBJ1-6 | 38:62 | ||
| TRBV7-9*01 | 1092 | 689 | 63.10 | 100.00 | 3.55 | 764 | 564 | TRBJ1-6 | 24:76 | ||
| TRBV29-1*01 | 1920 | 1371 | 71.41 | 100.00 | 7.07 | 1563 | 1221 | TRBJ1-6 | 52:48 | ||
| Totals | 30134 | 19386 | 64.33 | 1105:-1005 |