Genotype 'P4_I22_S1_ogrdb_report' (Submission S00036)
NCBI Information
| Sample | Title |
|---|---|
| SAMEA4973455 | HCV B-Cell |
| Record Set | Title |
|---|---|
| ERR2843418 | Illumina MiSeq sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| TRBV10-3*03_313GCCATCAGTGAGTC326 | 102 | TRBV10-3*03 | TRBV10-3*02 | 0 | 3 | -313G,-314C,-315C,-316A,-317T,-318C,-319A,-320G,-321T,-322G,-323A,-324G,-325T,-326C | 4 | -105A,-106I,-107S,-108E | |
| TRBV14*02_322CAAGA326 | 118 | TRBV14*02 | TRBV14*01 | 0 | 1 | -322C,-323A,-324A,-325G,-326A | 1 | -108Q | |
| TRBV12-4*01_C87T | 299 | TRBV12-4*01 | TRBV12-4*01 | 1 | 1 | C87T | 0 | ||
| TRBV12-5*01_C28G | 8 | TRBV12-5*01 | TRBV12-5*01 | 1 | 1 | C28G | 1 | H10D | |
| TRBV5-5*02_322TTGG325 | 38 | TRBV5-5*02 | TRBV5-5*01 | 0 | 1 | -322T,-323T,-324G,-325G | 1 | -108L | |
| TRBV6-6*01_G264A | 87 | TRBV6-6*01 | TRBV6-6*02 | 1 | 3 | G264A | 0 | ||
| TRBV6-23*01 | 301 | ||||||||
| TRBV7-7*01_C315T | 21 | TRBV7-7*01 | TRBV7-7*01 | 1 | 1 | C315T | 0 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TRBV10-1*01 | 25 | 21 | 84.00 | 100.00 | 0.26 | 24 | 21 | ||||
| TRBV20-1*01 | 938 | 609 | 64.93 | 100.00 | 7.59 | 817 | 580 | ||||
| TRBV10-2*01 | 43 | 28 | 65.12 | 100.00 | 0.35 | 31 | 23 | ||||
| TRBV10-3*02 | 100 | 73 | 73.00 | 50.00 | 0.91 | 98 | 73 | ||||
| TRBV10-3*03_313GCCATCAGTGAGTC326 | 102 | 79 | 77.45 | 50.00 | 0.98 | 97 | 79 | ||||
| TRBV1*01 | 2 | 2 | 100.00 | 100.00 | 0.02 | 2 | 2 | ||||
| TRBV13*01 | 67 | 40 | 59.70 | 100.00 | 0.50 | 62 | 40 | ||||
| TRBV14*01 | 111 | 74 | 66.67 | 48.00 | 0.92 | 86 | 66 | ||||
| TRBV14*02_322CAAGA326 | 118 | 77 | 65.25 | 52.00 | 0.96 | 91 | 71 | ||||
| TRBV15*02 | 158 | 84 | 53.16 | 100.00 | 1.05 | 119 | 75 | ||||
| TRBV16*01 | 8 | 5 | 62.50 | 100.00 | 0.06 | 8 | 5 | ||||
| TRBV18*01 | 253 | 194 | 76.68 | 100.00 | 2.42 | 234 | 189 | ||||
| TRBV19*01 | 300 | 221 | 73.67 | 100.00 | 2.75 | 277 | 213 | ||||
| TRBV2*01 | 570 | 355 | 62.28 | 100.00 | 4.42 | 426 | 307 | ||||
| TRBV27*01 | 383 | 255 | 66.58 | 100.00 | 3.18 | 307 | 235 | ||||
| TRBV28*01 | 409 | 264 | 64.55 | 100.00 | 3.29 | 350 | 259 | ||||
| TRBV30*01 | 302 | 183 | 60.60 | 100.00 | 2.28 | 279 | 175 | ||||
| TRBV9*01 | 331 | 183 | 55.29 | 100.00 | 2.28 | 249 | 166 | ||||
| TRBV11-1*01 | 35 | 24 | 68.57 | 100.00 | 0.30 | 35 | 24 | ||||
| TRBV21-1*01 | 101 | 79 | 78.22 | 100.00 | 0.98 | 90 | 74 | ||||
| TRBV11-2*01 | 200 | 152 | 76.00 | 100.00 | 1.89 | 190 | 148 | ||||
| TRBV11-3*01 | 9 | 8 | 88.89 | 24.00 | 0.10 | 9 | 8 | ||||
| TRBV11-3*04 | 29 | 20 | 68.97 | 76.00 | 0.25 | 28 | 20 | ||||
| TRBV12-1*01 | 1 | 1 | 100.00 | 100.00 | 0.01 | 1 | 1 | ||||
| TRBV12-2*01 | 2 | 2 | 100.00 | 100.00 | 0.02 | 2 | 2 | ||||
| TRBV12-3*01 | 394 | 256 | 64.97 | 100.00 | 3.19 | 337 | 251 | ||||
| TRBV12-4*01 | 60 | 40 | 66.67 | 17.00 | 0.50 | 46 | 37 | ||||
| TRBV12-4*01_C87T | 299 | 140 | 46.82 | 83.00 | 1.74 | 139 | 109 | ||||
| TRBV12-5*01 | 33 | 26 | 78.79 | 80.00 | 0.32 | 31 | 26 | ||||
| TRBV12-5*01_C28G | 8 | 6 | 75.00 | 20.00 | 0.07 | 7 | 5 | ||||
| TRBV23-1*01 | 67 | 49 | 73.13 | 100.00 | 0.61 | 55 | 42 | ||||
| TRBV3-1*01 | 537 | 420 | 78.21 | 100.00 | 5.23 | 485 | 412 | ||||
| TRBV3-2*02 | 8 | 3 | 37.50 | 100.00 | 0.04 | 8 | 3 | ||||
| TRBV24-1*01 | 191 | 128 | 67.02 | 100.00 | 1.60 | 155 | 119 | ||||
| TRBV4-1*01 | 585 | 390 | 66.67 | 100.00 | 4.86 | 410 | 336 | ||||
| TRBV4-2*01 | 270 | 188 | 69.63 | 100.00 | 2.34 | 215 | 172 | ||||
| TRBV4-3*01 | 237 | 158 | 66.67 | 100.00 | 1.97 | 214 | 155 | ||||
| TRBV25-1*01 | 142 | 89 | 62.68 | 100.00 | 1.11 | 94 | 79 | ||||
| TRBV5-1*01 | 842 | 566 | 67.22 | 100.00 | 7.05 | 745 | 550 | ||||
| TRBV5-3*01 | 1 | 1 | 100.00 | 50.00 | 0.01 | 1 | 1 | ||||
| TRBV5-3*02 | 1 | 0 | 0.00 | 50.00 | 0.00 | 1 | 0 | ||||
| TRBV5-4*01 | 68 | 47 | 69.12 | 100.00 | 0.59 | 57 | 44 | ||||
| TRBV5-5*01 | 57 | 42 | 73.68 | 60.00 | 0.52 | 57 | 42 | ||||
| TRBV5-5*02_322TTGG325 | 38 | 30 | 78.95 | 40.00 | 0.37 | 37 | 29 | ||||
| TRBV5-6*01 | 137 | 87 | 63.50 | 100.00 | 1.08 | 123 | 85 | ||||
| TRBV5-7*01 | 6 | 3 | 50.00 | 100.00 | 0.04 | 5 | 3 | ||||
| TRBV5-8*01 | 13 | 8 | 61.54 | 100.00 | 0.10 | 11 | 7 | ||||
| TRBV6-1*01 | 256 | 176 | 68.75 | 100.00 | 2.19 | 212 | 167 | ||||
| TRBV6-4*01 | 86 | 34 | 39.53 | 69.00 | 0.42 | 36 | 25 | ||||
| TRBV6-4*02 | 39 | 22 | 56.41 | 31.00 | 0.27 | 28 | 20 | ||||
| TRBV6-5*01 | 321 | 219 | 68.22 | 100.00 | 2.73 | 291 | 215 | ||||
| TRBV6-6*02 | 127 | 87 | 68.50 | 59.00 | 1.08 | 109 | 86 | ||||
| TRBV6-6*01_G264A | 87 | 62 | 71.26 | 41.00 | 0.77 | 83 | 60 | ||||
| TRBV6-7*01 | 6 | 4 | 66.67 | 100.00 | 0.05 | 5 | 4 | ||||
| TRBV6-8*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| TRBV6-9*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| TRBV6-23*01 | 301 | 186 | 61.79 | 100.00 | 2.32 | 244 | 174 | ||||
| TRBV7-1*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| TRBV7-2*01 | 475 | 318 | 66.95 | 100.00 | 3.96 | 434 | 308 | ||||
| TRBV7-3*01 | 88 | 64 | 72.73 | 44.00 | 0.80 | 82 | 61 | ||||
| TRBV7-3*03 | 111 | 44 | 39.64 | 56.00 | 0.55 | 24 | 16 | ||||
| TRBV7-4*01 | 6 | 4 | 66.67 | 100.00 | 0.05 | 6 | 4 | ||||
| TRBV7-6*01 | 101 | 78 | 77.23 | 100.00 | 0.97 | 92 | 75 | ||||
| TRBV7-7*01 | 10 | 7 | 70.00 | 32.00 | 0.09 | 10 | 7 | ||||
| TRBV7-7*01_C315T | 21 | 16 | 76.19 | 68.00 | 0.20 | 17 | 16 | ||||
| TRBV7-8*01 | 238 | 139 | 58.40 | 100.00 | 1.73 | 167 | 121 | ||||
| TRBV7-9*03 | 571 | 359 | 62.87 | 100.00 | 4.47 | 437 | 319 | ||||
| TRBV29-1*01 | 755 | 496 | 65.70 | 100.00 | 6.18 | 618 | 469 | ||||
| Totals | 12193 | 8025 | 65.82 |