Genotype 'P4_I21_S1_ogrdb_report' (Submission S00036)


Genotype Name	P4_I21_S1_ogrdb_report
Subject ID	SC1
Locus	TRB
Sequence Type	V
Genotype Filename	P4_I21_S1_ogrdb_report.csv
Tool/Settings	P4_Sequence_protocol

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4973449	HCV B-Cell

Record Set	Title
ERR2843412	Illumina MiSeq sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
TRBV20-102_319AGAGA323*	1789	TRBV20-1*02	TRBV20-1*01	0	1	-319A,-320G,-321A,-322G,-323A	1	-107R
**TRBV12-501_C28G_T140A***	77	TRBV12-5*01	TRBV12-5*01	2	2	C28G,T140A	2	H10D,M47K
TRBV5-502_322TTGG325*	493	TRBV5-5*02	TRBV5-7*01	0	9	-322T,-323T,-324G,-325G	1	-108L
TRBV6-2301*	1498
TRBV7-701_C315T*	319	TRBV7-7*01	TRBV7-6*01	1	12	C315T	0

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
TRBV10-1*01	416	191	45.91	100.00	0.63	157	109	TRBJ1-6	75:25
TRBV20-1*01	2555	1821	71.27	59.00	5.98	2335	1744	TRBJ1-6	99:1
TRBV20-102_319AGAGA323*	1789	1293	72.28	41.00	4.25	1664	1253	TRBJ1-6	0:100
TRBV10-2*01	145	108	74.48	100.00	0.35	108	94	TRBJ1-6	75:25
TRBV10-3*01	1477	950	64.32	100.00	3.12	1083	810	TRBJ1-6	43:57
TRBV1*01	5	1	20.00	100.00	0.00	5	1	TRBJ1-6
TRBV13*01	187	128	68.45	100.00	0.42	167	120	TRBJ1-6	50:50
TRBV14*01	429	316	73.66	100.00	1.04	407	311	TRBJ1-6	35:65
TRBV15*02	611	394	64.48	100.00	1.29	471	349	TRBJ1-6	64:36
TRBV16*01	40	24	60.00	100.00	0.08	38	24	TRBJ1-6
TRBV18*01	1116	783	70.16	100.00	2.57	969	715	TRBJ1-6	36:64
TRBV19*01	589	380	64.52	100.00	1.25	536	354	TRBJ1-6	35:65
TRBV2*01	1263	891	70.55	100.00	2.93	1153	844	TRBJ1-6	39:61
TRBV27*01	1562	1137	72.79	100.00	3.74	1297	1030	TRBJ1-6	37:63
TRBV28*01	1203	893	74.23	100.00	2.93	1117	865	TRBJ1-6	88:12
TRBV30*01	485	278	57.32	100.00	0.91	339	218	TRBJ1-6	100:0
TRBV9*01	1127	825	73.20	100.00	2.71	1060	806	TRBJ1-6	46:54
TRBV11-1*01	64	49	76.56	100.00	0.16	59	48	TRBJ1-6	0:100
TRBV21-1*01	198	161	81.31	58.00	0.53	187	158	TRBJ1-6	100:0
TRBV21-1*02	146	122	83.56	42.00	0.40	140	120	TRBJ1-6	0:100
TRBV11-2*01	831	618	74.37	100.00	2.03	780	600	TRBJ1-6	33:67
TRBV11-3*01	144	114	79.17	100.00	0.37	140	113	TRBJ1-6	0:100
TRBV12-1*01	8	1	12.50	100.00	0.00	4	1	TRBJ1-6
TRBV12-2*01	23	17	73.91	100.00	0.06	22	16	TRBJ1-6
TRBV12-3*01	1645	1174	71.37	100.00	3.86	1533	1134	TRBJ1-6	58:42
TRBV12-4*01	710	514	72.39	100.00	1.69	653	501	TRBJ1-6	40:60
TRBV12-5*01	157	123	78.34	67.00	0.40	148	120	TRBJ1-6	0:100
**TRBV12-501_C28G_T140A***	77	58	75.32	33.00	0.19	74	56	TRBJ1-6
TRBV23-1*01	85	48	56.47	100.00	0.16	80	47	TRBJ1-6	0:100
TRBV3-1*01	1404	1053	75.00	100.00	3.46	1324	1019	TRBJ1-6	44:56
TRBV3-2*01	21	15	71.43	54.00	0.05	19	14	TRBJ1-6
TRBV3-2*02	18	14	77.78	46.00	0.05	18	14	TRBJ1-6	0:100
TRBV24-1*01	530	311	58.68	81.00	1.02	314	236	TRBJ1-6	100:0
TRBV4-1*01	929	517	55.65	100.00	1.70	447	355	TRBJ1-6	38:62
TRBV24-1*02	124	91	73.39	19.00	0.30	108	84	TRBJ1-6	0:100
TRBV4-2*01	715	479	66.99	100.00	1.57	498	396	TRBJ1-6	12:88
TRBV4-3*01	1335	1015	76.03	100.00	3.34	1189	957	TRBJ1-6	35:65
TRBV25-1*01	318	254	79.87	100.00	0.83	300	246	TRBJ1-6	62:38
TRBV5-1*01	2713	1872	69.00	100.00	6.15	2346	1757	TRBJ1-6	44:56
TRBV5-3*01	7	3	42.86	100.00	0.01	7	3	TRBJ1-6	100:0
TRBV5-4*01	143	106	74.13	100.00	0.35	140	104	TRBJ1-6	0:100
TRBV5-502_322TTGG325*	493	350	70.99	100.00	1.15	436	324	TRBJ1-6	24:76
TRBV5-6*01	487	360	73.92	100.00	1.18	449	347	TRBJ1-6	30:70
TRBV5-7*01	3	2	66.67	100.00	0.01	3	2	TRBJ1-6
TRBV5-8*01	57	47	82.46	100.00	0.15	56	47	TRBJ1-6	0:100
TRBV6-1*01	536	373	69.59	100.00	1.23	517	369	TRBJ1-6	41:59
TRBV6-4*01	133	104	78.20	100.00	0.34	125	100	TRBJ1-6	25:75
TRBV6-5*01	1333	936	70.22	100.00	3.08	1177	893	TRBJ1-6	44:56
TRBV6-6*01	685	509	74.31	100.00	1.67	649	494	TRBJ1-6	41:59
TRBV6-7*01	16	11	68.75	100.00	0.04	16	11	TRBJ1-6
TRBV6-8*01	5	5	100.00	100.00	0.02	5	5	TRBJ1-6
TRBV6-9*01	6	5	83.33	100.00	0.02	6	5	TRBJ1-6
TRBV6-2301*	1498	1093	72.96	100.00	3.59	1394	1049	TRBJ1-6	32:68
TRBV7-1*01	4	4	100.00	100.00	0.01	4	4	TRBJ1-6
TRBV7-2*01	2779	1968	70.82	100.00	6.47	2571	1887	TRBJ1-6	37:63
TRBV7-3*01	616	370	60.06	89.00	1.22	409	310	TRBJ1-6	0:100
TRBV7-3*02	74	48	64.86	11.00	0.16	72	48	TRBJ1-6	100:0
TRBV7-4*01	20	16	80.00	100.00	0.05	17	14	TRBJ1-6	0:100
TRBV7-6*01	395	298	75.44	100.00	0.98	372	290	TRBJ1-6	18:82
TRBV7-701_C315T*	319	168	52.66	100.00	0.55	127	92	TRBJ1-6	50:50
TRBV7-8*01	649	442	68.10	100.00	1.45	554	407	TRBJ1-6	60:40
TRBV7-9*01	1646	956	58.08	57.00	3.14	999	770	TRBJ1-6	100:0
TRBV7-9*03	1259	881	69.98	43.00	2.90	1042	810	TRBJ1-6	0:100
TRBV29-1*01	3364	2341	69.59	100.00	7.69	2714	2130	TRBJ1-6	33:67
Totals	43721	30429	69.6						1156:-1056