Genotype 'P4_I16_S1_ogrdb_report' (Submission S00036)


Genotype Name	P4_I16_S1_ogrdb_report
Subject ID	CI21
Locus	TRB
Sequence Type	V
Genotype Filename	P4_I16_S1_ogrdb_report.csv
Tool/Settings	P4_Sequence_protocol

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4973440	HCV B-Cell

Record Set	Title
ERR2843403	Illumina MiSeq sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
TRBV20-102_319AGAGA323*	3183	TRBV20-1*02	TRBV20-1*01	0	1	-319A,-320G,-321A,-322G,-323A	1	-107R
**TRBV12-201_T187C***	7	TRBV12-2*01	TRBV12-2*01	1	1	T187C	1	*63R
TRBV12-501_C28G*	53	TRBV12-5*01	TRBV12-5*01	1	1	C28G	1	H10D
TRBV5-502_322TTGG325*	211	TRBV5-5*02	TRBV5-5*01	0	1	-322T,-323T,-324G,-325G	1	-108L
TRBV5-601_T284G*	276	TRBV5-6*01	TRBV5-6*01	1	1	T284G	1	L95W
TRBV6-2301*	1044
TRBV7-701_C315T*	90	TRBV7-7*01	TRBV7-7*01	1	1	C315T	0

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
TRBV10-1*01	99	72	72.73	49.00	0.16	89	69	TRBJ1-6	0:100
TRBV20-1*01	3901	2584	66.24	55.00	5.78	3346	2465	TRBJ1-6	100:0
TRBV10-1*02	104	77	74.04	51.00	0.17	95	70	TRBJ1-6	100:0
TRBV20-102_319AGAGA323*	3183	2145	67.39	45.00	4.80	2680	2036	TRBJ1-6	0:100
TRBV10-2*01	130	92	70.77	47.00	0.21	101	76	TRBJ1-6	0:100
TRBV10-2*02	149	111	74.50	53.00	0.25	136	106	TRBJ1-6	100:0
TRBV10-3*02	1443	1049	72.70	100.00	2.35	1237	991	TRBJ1-6	46:54
TRBV1*01	17	9	52.94	100.00	0.02	17	9	TRBJ1-6
TRBV13*01	1007	558	55.41	100.00	1.25	577	423	TRBJ1-6	39:61
TRBV14*01	875	667	76.23	100.00	1.49	739	609	TRBJ1-6	47:53
TRBV15*02	1307	832	63.66	100.00	1.86	1033	761	TRBJ1-6	41:59
TRBV16*01	64	50	78.12	100.00	0.11	60	48	TRBJ1-6	17:83
TRBV18*01	1254	934	74.48	100.00	2.09	1089	857	TRBJ1-6	46:54
TRBV19*01	887	632	71.25	100.00	1.41	762	561	TRBJ1-6	34:66
TRBV2*01	3984	2614	65.61	100.00	5.84	2850	2191	TRBJ1-6	38:62
TRBV27*01	2299	1683	73.21	100.00	3.76	1954	1559	TRBJ1-6	53:47
TRBV28*01	1519	1146	75.44	100.00	2.56	1326	1080	TRBJ1-6	94:6
TRBV30*01	939	523	55.70	100.00	1.17	706	444	TRBJ1-6	4:96
TRBV9*01	636	450	70.75	70.00	1.01	551	425	TRBJ1-6	5:95
TRBV9*02	271	204	75.28	30.00	0.46	246	194	TRBJ1-6	100:0
TRBV11-1*01	130	93	71.54	100.00	0.21	125	93	TRBJ1-6	100:0
TRBV21-1*01	606	463	76.40	61.00	1.04	489	416	TRBJ1-6	100:0
TRBV21-1*02	388	308	79.38	39.00	0.69	358	291	TRBJ1-6	0:100
TRBV11-2*01	1377	1016	73.78	100.00	2.27	1211	948	TRBJ1-6	50:50
TRBV11-3*01	198	163	82.32	100.00	0.36	169	144	TRBJ1-6	0:100
TRBV12-1*01	5	2	40.00	100.00	0.00	5	2	TRBJ1-6
TRBV12-2*01	7	6	85.71	50.00	0.01	6	6	TRBJ1-6
**TRBV12-201_T187C***	7	5	71.43	50.00	0.01	7	5	TRBJ1-6	100:0
TRBV12-3*01	2553	1826	71.52	100.00	4.08	2177	1722	TRBJ1-6	34:66
TRBV12-4*01	864	612	70.83	100.00	1.37	743	577	TRBJ1-6	30:70
TRBV12-5*01	174	138	79.31	77.00	0.31	155	128	TRBJ1-6	0:100
TRBV12-501_C28G*	53	43	81.13	23.00	0.10	52	43	TRBJ1-6	100:0
TRBV23-1*01	264	165	62.50	100.00	0.37	221	141	TRBJ1-6	40:60
TRBV3-1*01	3036	2329	76.71	100.00	5.21	2572	2139	TRBJ1-6	36:64
TRBV24-1*01	540	380	70.37	71.00	0.85	458	359	TRBJ1-6	100:0
TRBV4-1*01	2867	2204	76.87	100.00	4.93	2442	2038	TRBJ1-6	44:56
TRBV24-1*02	220	157	71.36	29.00	0.35	183	147	TRBJ1-6	0:100
TRBV4-2*01	1257	932	74.14	100.00	2.08	1046	832	TRBJ1-6	33:67
TRBV25-1*01	649	485	74.73	100.00	1.08	564	457	TRBJ1-6	25:75
TRBV5-1*01	5082	3516	69.19	100.00	7.86	4402	3339	TRBJ1-6	37:63
TRBV5-3*01	4	3	75.00	57.00	0.01	4	3	TRBJ1-6
TRBV5-3*02	3	2	66.67	43.00	0.00	3	2	TRBJ1-6
TRBV5-4*01	324	243	75.00	100.00	0.54	288	224	TRBJ1-6	62:38
TRBV5-5*01	262	201	76.72	55.00	0.45	243	192	TRBJ1-6	100:0
TRBV5-502_322TTGG325*	211	166	78.67	45.00	0.37	201	162	TRBJ1-6	0:100
TRBV5-6*01	402	270	67.16	59.00	0.60	338	245	TRBJ1-6	5:95
TRBV5-601_T284G*	276	204	73.91	41.00	0.46	237	185	TRBJ1-6	100:0
TRBV5-7*01	7	7	100.00	100.00	0.02	7	7	TRBJ1-6
TRBV5-8*01	41	29	70.73	100.00	0.06	36	27	TRBJ1-6	100:0
TRBV6-1*01	1833	1325	72.29	100.00	2.96	1484	1175	TRBJ1-6	32:68
TRBV6-4*01	394	235	59.64	65.00	0.53	236	186	TRBJ1-6	0:100
TRBV6-4*02	211	144	68.25	35.00	0.32	170	132	TRBJ1-6	100:0
TRBV6-5*01	1371	965	70.39	100.00	2.16	1181	897	TRBJ1-6	20:80
TRBV6-6*01	543	380	69.98	54.00	0.85	427	335	TRBJ1-6	0:100
TRBV6-6*02	466	329	70.60	46.00	0.74	399	302	TRBJ1-6	100:0
TRBV6-7*01	23	16	69.57	100.00	0.04	22	16	TRBJ1-6
TRBV6-8*01	9	7	77.78	100.00	0.02	9	7	TRBJ1-6	0:100
TRBV6-9*01	9	6	66.67	100.00	0.01	9	6	TRBJ1-6
TRBV6-2301*	1044	704	67.43	100.00	1.57	833	636	TRBJ1-6	11:89
TRBV7-2*02	1733	1203	69.42	100.00	2.69	1443	1109	TRBJ1-6	64:36
TRBV7-3*01	506	333	65.81	34.00	0.74	413	305	TRBJ1-6	0:100
TRBV7-3*03	1000	411	41.10	66.00	0.92	268	197	TRBJ1-6	100:0
TRBV7-4*01	26	19	73.08	100.00	0.04	22	18	TRBJ1-6
TRBV7-6*01	669	479	71.60	100.00	1.07	522	421	TRBJ1-6	62:38
TRBV7-7*01	80	60	75.00	47.00	0.13	68	53	TRBJ1-6
TRBV7-701_C315T*	90	73	81.11	53.00	0.16	84	69	TRBJ1-6
TRBV7-8*01	1030	745	72.33	100.00	1.67	869	682	TRBJ1-6	48:52
TRBV7-9*03	2576	1814	70.42	100.00	4.06	2182	1680	TRBJ1-6	49:51
TRBV29-1*01	4491	3076	68.49	100.00	6.88	3677	2819	TRBJ1-6	30:70
Totals	63979	44724	69.9						1748:-1648