Genotype 'P4_I11_S1_ogrdb_report' (Submission S00036)
| Sample | Title |
|---|---|
| SAMEA4973435 | HCV B-Cell |
| Record Set | Title |
|---|---|
| ERR2843398 | Illumina MiSeq sequencing |
Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| TRBV10-3*03_313GCCATCAGTGAGTC326 | 954 | TRBV10-3*03 | TRBV10-3*02 | 0 | 3 | -313G,-314C,-315C,-316A,-317T,-318C,-319A,-320G,-321T,-322G,-323A,-324G,-325T,-326C | 4 | -105A,-106I,-107S,-108E | |
| TRBV14*02_322CAAGA326 | 544 | TRBV14*02 | TRBV14*01 | 0 | 1 | -322C,-323A,-324A,-325G,-326A | 1 | -108Q | |
| TRBV19*01_A24G | 817 | TRBV19*01 | TRBV19*01 | 1 | 1 | A24G | 0 | ||
| TRBV12-1*01_C165A | 3 | TRBV12-1*01 | TRBV12-1*01 | 1 | 1 | C165A | 1 | Y55* | |
| TRBV12-4*01_C87T | 1129 | TRBV12-4*01 | TRBV12-4*01 | 1 | 1 | C87T | 0 | ||
| TRBV12-5*01_C28G | 95 | TRBV12-5*01 | TRBV12-5*01 | 1 | 1 | C28G | 1 | H10D | |
| TRBV5-5*02_322TTGG325 | 320 | TRBV5-5*02 | TRBV5-5*01 | 0 | 1 | -322T,-323T,-324G,-325G | 1 | -108L | |
| TRBV6-9*01_A303G | 8 | TRBV6-9*01 | TRBV6-9*01 | 1 | 1 | A303G | 0 | ||
| TRBV6-23*01 | 2052 | ||||||||
| TRBV7-7*01_C315T | 84 | TRBV7-7*01 | TRBV7-7*01 | 1 | 1 | C315T | 0 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TRBV20-1*01 | 5139 | 3661 | 71.24 | 60.00 | 5.79 | 4537 | 3495 | ||||
| TRBV10-1*02 | 236 | 171 | 72.46 | 100.00 | 0.27 | 212 | 164 | ||||
| TRBV20-1*05 | 3418 | 2360 | 69.05 | 40.00 | 3.73 | 2941 | 2224 | ||||
| TRBV10-2*01 | 46 | 41 | 89.13 | 16.00 | 0.06 | 40 | 36 | ||||
| TRBV10-2*02 | 241 | 170 | 70.54 | 84.00 | 0.27 | 203 | 149 | ||||
| TRBV10-3*02 | 1258 | 952 | 75.68 | 57.00 | 1.51 | 1118 | 896 | ||||
| TRBV10-3*03_313GCCATCAGTGAGTC326 | 954 | 786 | 82.39 | 43.00 | 1.24 | 872 | 750 | ||||
| TRBV1*01 | 12 | 8 | 66.67 | 100.00 | 0.01 | 12 | 8 | ||||
| TRBV13*01 | 710 | 478 | 67.32 | 100.00 | 0.76 | 588 | 432 | ||||
| TRBV14*01 | 517 | 410 | 79.30 | 49.00 | 0.65 | 479 | 395 | ||||
| TRBV14*02_322CAAGA326 | 544 | 415 | 76.29 | 51.00 | 0.66 | 475 | 386 | ||||
| TRBV15*02 | 1065 | 737 | 69.20 | 100.00 | 1.17 | 931 | 696 | ||||
| TRBV16*01 | 80 | 65 | 81.25 | 100.00 | 0.10 | 69 | 58 | ||||
| TRBV17*01 | 5 | 4 | 80.00 | 100.00 | 0.01 | 4 | 3 | ||||
| TRBV18*01 | 2121 | 1617 | 76.24 | 100.00 | 2.56 | 1924 | 1502 | ||||
| TRBV19*01 | 677 | 491 | 72.53 | 45.00 | 0.78 | 628 | 467 | ||||
| TRBV19*01_A24G | 817 | 609 | 74.54 | 55.00 | 0.96 | 692 | 549 | ||||
| TRBV2*01 | 3284 | 2257 | 68.73 | 100.00 | 3.57 | 2484 | 1910 | ||||
| TRBV27*01 | 3020 | 2281 | 75.53 | 100.00 | 3.61 | 2657 | 2141 | ||||
| TRBV28*01 | 4143 | 2683 | 64.76 | 100.00 | 4.24 | 2759 | 2215 | ||||
| TRBV30*01 | 778 | 444 | 57.07 | 56.00 | 0.70 | 671 | 401 | ||||
| TRBV30*02 | 599 | 343 | 57.26 | 44.00 | 0.54 | 535 | 326 | ||||
| TRBV9*01 | 1401 | 869 | 62.03 | 65.00 | 1.37 | 940 | 726 | ||||
| TRBV9*02 | 762 | 539 | 70.73 | 35.00 | 0.85 | 663 | 508 | ||||
| TRBV11-1*01 | 233 | 161 | 69.10 | 100.00 | 0.25 | 204 | 151 | ||||
| TRBV21-1*01 | 781 | 649 | 83.10 | 100.00 | 1.03 | 726 | 626 | ||||
| TRBV11-2*01 | 590 | 417 | 70.68 | 36.00 | 0.66 | 484 | 388 | ||||
| TRBV11-2*03 | 1033 | 699 | 67.67 | 64.00 | 1.11 | 768 | 606 | ||||
| TRBV11-3*01 | 61 | 54 | 88.52 | 15.00 | 0.09 | 57 | 51 | ||||
| TRBV11-3*04 | 341 | 245 | 71.85 | 85.00 | 0.39 | 304 | 229 | ||||
| TRBV12-1*01 | 3 | 2 | 66.67 | 50.00 | 0.00 | 3 | 2 | ||||
| TRBV12-1*01_C165A | 3 | 2 | 66.67 | 50.00 | 0.00 | 3 | 2 | ||||
| TRBV12-2*01 | 43 | 32 | 74.42 | 100.00 | 0.05 | 37 | 28 | ||||
| TRBV12-3*01 | 3332 | 2472 | 74.19 | 100.00 | 3.91 | 2908 | 2334 | ||||
| TRBV12-4*01 | 1624 | 1203 | 74.08 | 59.00 | 1.90 | 1427 | 1141 | ||||
| TRBV12-4*01_C87T | 1129 | 863 | 76.44 | 41.00 | 1.36 | 1018 | 820 | ||||
| TRBV12-5*01 | 465 | 273 | 58.71 | 83.00 | 0.43 | 248 | 200 | ||||
| TRBV12-5*01_C28G | 95 | 74 | 77.89 | 17.00 | 0.12 | 88 | 72 | ||||
| TRBV23-1*01 | 184 | 112 | 60.87 | 100.00 | 0.18 | 163 | 100 | ||||
| TRBV3-1*01 | 4296 | 2995 | 69.72 | 100.00 | 4.73 | 3128 | 2545 | ||||
| TRBV3-2*02 | 52 | 39 | 75.00 | 100.00 | 0.06 | 39 | 34 | ||||
| TRBV24-1*01 | 2157 | 1524 | 70.65 | 100.00 | 2.41 | 1890 | 1441 | ||||
| TRBV4-1*01 | 3351 | 2483 | 74.10 | 100.00 | 3.93 | 2754 | 2253 | ||||
| TRBV4-2*01 | 1544 | 1149 | 74.42 | 100.00 | 1.82 | 1313 | 1059 | ||||
| TRBV4-3*01 | 1816 | 1129 | 62.17 | 100.00 | 1.78 | 1075 | 873 | ||||
| TRBV25-1*01 | 815 | 640 | 78.53 | 100.00 | 1.01 | 752 | 619 | ||||
| TRBV5-1*01 | 6123 | 4429 | 72.33 | 100.00 | 7.00 | 5359 | 4158 | ||||
| TRBV5-3*01 | 12 | 8 | 66.67 | 100.00 | 0.01 | 12 | 8 | ||||
| TRBV5-4*01 | 352 | 234 | 66.48 | 100.00 | 0.37 | 331 | 225 | ||||
| TRBV5-5*01 | 540 | 368 | 68.15 | 63.00 | 0.58 | 401 | 315 | ||||
| TRBV5-5*02_322TTGG325 | 320 | 246 | 76.88 | 37.00 | 0.39 | 302 | 240 | ||||
| TRBV5-6*01 | 889 | 651 | 73.23 | 100.00 | 1.03 | 808 | 624 | ||||
| TRBV5-7*01 | 11 | 10 | 90.91 | 100.00 | 0.02 | 11 | 10 | ||||
| TRBV5-8*01 | 80 | 52 | 65.00 | 100.00 | 0.08 | 77 | 52 | ||||
| TRBV6-1*01 | 1978 | 1469 | 74.27 | 100.00 | 2.32 | 1724 | 1354 | ||||
| TRBV6-4*01 | 141 | 105 | 74.47 | 52.00 | 0.17 | 122 | 100 | ||||
| TRBV6-4*02 | 131 | 97 | 74.05 | 48.00 | 0.15 | 122 | 95 | ||||
| TRBV6-5*01 | 1807 | 1350 | 74.71 | 100.00 | 2.13 | 1662 | 1294 | ||||
| TRBV6-6*01 | 669 | 520 | 77.73 | 22.00 | 0.82 | 612 | 492 | ||||
| TRBV6-6*02 | 2439 | 1135 | 46.54 | 78.00 | 1.79 | 801 | 647 | ||||
| TRBV6-7*01 | 14 | 10 | 71.43 | 100.00 | 0.02 | 14 | 10 | ||||
| TRBV6-8*01 | 8 | 6 | 75.00 | 100.00 | 0.01 | 8 | 6 | ||||
| TRBV6-9*01 | 7 | 5 | 71.43 | 47.00 | 0.01 | 7 | 5 | ||||
| TRBV6-9*01_A303G | 8 | 8 | 100.00 | 53.00 | 0.01 | 8 | 8 | ||||
| TRBV6-23*01 | 2052 | 1482 | 72.22 | 100.00 | 2.34 | 1785 | 1375 | ||||
| TRBV7-1*01 | 3 | 1 | 33.33 | 100.00 | 0.00 | 3 | 1 | ||||
| TRBV7-2*01 | 4499 | 3254 | 72.33 | 100.00 | 5.14 | 3879 | 3011 | ||||
| TRBV7-3*01 | 732 | 540 | 73.77 | 86.00 | 0.85 | 647 | 512 | ||||
| TRBV7-3*03 | 119 | 89 | 74.79 | 14.00 | 0.14 | 111 | 87 | ||||
| TRBV7-4*01 | 29 | 18 | 62.07 | 100.00 | 0.03 | 26 | 17 | ||||
| TRBV7-6*01 | 560 | 421 | 75.18 | 100.00 | 0.67 | 486 | 391 | ||||
| TRBV7-7*01 | 75 | 59 | 78.67 | 47.00 | 0.09 | 69 | 57 | ||||
| TRBV7-7*01_C315T | 84 | 65 | 77.38 | 53.00 | 0.10 | 73 | 63 | ||||
| TRBV7-8*01 | 1273 | 940 | 73.84 | 100.00 | 1.49 | 1097 | 851 | ||||
| TRBV7-9*03 | 4782 | 3441 | 71.96 | 100.00 | 5.44 | 4130 | 3192 | ||||
| TRBV29-1*01 | 3732 | 2632 | 70.53 | 100.00 | 4.16 | 2990 | 2374 | ||||
| Totals | 89244 | 63253 | 70.88 |