OGRDB

Genotype 'P1_I42_S1' (Submission S00031)


Genotype Name	P1_I42_S1
Subject ID	S39
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I42_S1_ogrdbstats.csv
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NCBI Information

Sample	Title
ERS2445804	Naive B-Cell repertoire

Record Set	Title
ERX2585560	Illumina MiSeq paired end sequencing

Legend:

Allele names in italic are not listed in the reference set.
Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
IGHV4-402_A106G*	294	IGHV4-4*02	IGHV4-59*01	1	17	A106G	1	S36G
IGHV4-5908*	298
IGHV4-6102_A234G*	476	IGHV4-61*02	IGHV4-4*07	1	4	A234G	1	I78M
IGHV5-5101_C45G*	514	IGHV5-51*03	IGHV1-46*03	0	80	-319C,-320A	0

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated
IGHV1-2*02	471	402	85.35	55.00	2.39	460	400
IGHV1-2*06	387	337	87.08	45.00	2.01	375	335
IGHV1-3*01	145	127	87.59	100.00	0.76	143	127
IGHV1-8*01	516	465	90.12	100.00	2.77	493	456
IGHV1-18*01	671	578	86.14	100.00	3.44	645	568
IGHV1-24*01	301	276	91.69	100.00	1.64	288	270
IGHV1-45*02	4	2	50.00	100.00	0.01	3	2
IGHV1-46*03	313	264	84.35	100.00	1.57	301	259
IGHV1-58*02	46	39	84.78	100.00	0.23	44	39
IGHV1-69*04	416	375	90.14	100.00	2.23	390	364
IGHV1-NL1*01	1	0	0.00	100.00	0.00	1	0
IGHV2-5*01	108	100	92.59	28.00	0.60	105	98
IGHV2-5*02	282	245	86.88	72.00	1.46	273	243
IGHV2-26*01	192	165	85.94	100.00	0.98	185	163
IGHV2-70*01	53	49	92.45	41.00	0.29	53	49
IGHV2-70*15	77	65	84.42	59.00	0.39	77	65
IGHV3-7*01	531	428	80.60	100.00	2.55	510	422
IGHV3-9*01	1496	1223	81.75	100.00	7.28	1375	1191
IGHV3-11*01	618	489	79.13	100.00	2.91	581	478
IGHV3-13*01	151	130	86.09	100.00	0.77	142	127
IGHV3-15*01	475	400	84.21	100.00	2.38	457	395
IGHV3-20*01	83	53	63.86	100.00	0.32	65	51
IGHV3-21*01	1360	1144	84.12	100.00	6.81	1287	1130
IGHV3-23*04	856	690	80.61	100.00	4.11	808	685
IGHV3-30-3*01	1195	961	80.42	100.00	5.72	1124	944
IGHV3-33*01	1330	1047	78.72	100.00	6.23	1222	1014
IGHV3-35*01	2	1	50.00	100.00	0.01	2	1
IGHV3-43*01	56	46	82.14	100.00	0.27	52	45
IGHV3-48*01	478	402	84.10	100.00	2.39	451	391
IGHV3-49*03	223	179	80.27	100.00	1.07	205	175
IGHV3-53*02	85	74	87.06	100.00	0.44	82	73
IGHV3-64*01	39	33	84.62	100.00	0.20	37	33
IGHV3-66*01	251	209	83.27	100.00	1.24	230	202
IGHV3-72*01	26	21	80.77	100.00	0.12	24	21
IGHV3-73*01	70	56	80.00	59.00	0.33	64	56
IGHV3-73*02	48	42	87.50	41.00	0.25	44	41
IGHV3-74*01	185	159	85.95	100.00	0.95	175	155
IGHV3-NL1*01	1	0	0.00	100.00	0.00	1	0
IGHV4-4*07	167	137	82.04	36.00	0.82	161	135
IGHV4-402_A106G*	294	253	86.05	64.00	1.51	278	243
IGHV4-28*01	1	1	100.00	50.00	0.01	1	1
IGHV4-28*04	1	0	0.00	50.00	0.00	1	0
IGHV4-30-2*01	179	159	88.83	100.00	0.95	171	158
IGHV4-30-4*01	162	130	80.25	100.00	0.77	156	129
IGHV4-31*03	838	718	85.68	100.00	4.27	796	700
IGHV4-34*01	1108	956	86.28	100.00	5.69	1044	929
IGHV4-39*01	1370	1181	86.20	100.00	7.03	1294	1146
IGHV4-59*01	671	569	84.80	69.00	3.39	655	562
IGHV4-5908*	298	243	81.54	31.00	1.45	283	237
IGHV4-6102_A234G*	476	395	82.98	100.00	2.35	461	390
IGHV5-5101_C45G*	514	428	83.27	100.00	2.55	491	415
IGHV6-1*01	176	151	85.80	100.00	0.90	170	148
IGHV7-4-1*02	241	205	85.06	100.00	1.22	232	200
Totals	20038	16802	83.85