Genotype 'P1_I29_S1' (Submission S00031)
NCBI Information
| Sample | Title |
|---|---|
| ERS2445794 | Naive B-Cell repertoire |
| Record Set | Title |
|---|---|
| ERX2585550 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-69*08_C191T | 848 | IGHV1-69*02 | IGHV1-18*01 | 0 | 31 | -319G,-320A | 0 | ||
| IGHV4-39*07_C288A | 1304 | IGHV4-39*07 | IGHV4-39*01 | 1 | 5 | C288A | 0 | ||
| IGHV4-59*08 | 372 | ||||||||
| IGHV5-51*01_C45G | 469 | IGHV5-51*03 | IGHV5-51*01 | 0 | 1 | -319C,-320A | 0 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*06 | 624 | 514 | 82.37 | 100.00 | 2.64 | 593 | 506 | IGHJ6 | 4:96 | ||
| IGHV1-3*01 | 605 | 534 | 88.26 | 100.00 | 2.74 | 588 | 525 | IGHJ6 | 49:51 | ||
| IGHV1-18*01 | 923 | 825 | 89.38 | 100.00 | 4.24 | 897 | 820 | IGHJ6 | 65:35 | ||
| IGHV1-24*01 | 195 | 176 | 90.26 | 100.00 | 0.90 | 192 | 175 | IGHJ6 | 48:52 | ||
| IGHV1-45*02 | 4 | 2 | 50.00 | 100.00 | 0.01 | 3 | 2 | IGHJ6 | |||
| IGHV1-46*01 | 390 | 355 | 91.03 | 64.00 | 1.82 | 383 | 354 | IGHJ6 | 100:0 | ||
| IGHV1-46*03 | 223 | 194 | 87.00 | 36.00 | 1.00 | 222 | 194 | IGHJ6 | 0:100 | ||
| IGHV1-58*02 | 83 | 77 | 92.77 | 100.00 | 0.40 | 80 | 74 | IGHJ6 | 82:18 | ||
| IGHV1-69*08_C191T | 848 | 768 | 90.57 | 100.00 | 3.94 | 816 | 757 | IGHJ6 | 64:36 | ||
| IGHV2-5*02 | 356 | 322 | 90.45 | 100.00 | 1.65 | 350 | 319 | IGHJ6 | 23:77 | ||
| IGHV2-26*01 | 173 | 157 | 90.75 | 100.00 | 0.81 | 169 | 156 | IGHJ6 | 38:62 | ||
| IGHV3-7*03 | 381 | 330 | 86.61 | 65.00 | 1.69 | 367 | 324 | IGHJ6 | 100:0 | ||
| IGHV3-7*04 | 206 | 165 | 80.10 | 35.00 | 0.85 | 200 | 162 | IGHJ6 | 0:100 | ||
| IGHV3-11*05 | 640 | 531 | 82.97 | 100.00 | 2.73 | 615 | 529 | IGHJ6 | 55:45 | ||
| IGHV3-13*04 | 218 | 190 | 87.16 | 100.00 | 0.98 | 211 | 185 | IGHJ6 | 66:34 | ||
| IGHV3-15*01 | 1005 | 829 | 82.49 | 100.00 | 4.26 | 945 | 814 | IGHJ6 | 53:47 | ||
| IGHV3-20*04 | 288 | 220 | 76.39 | 100.00 | 1.13 | 274 | 218 | IGHJ6 | 41:59 | ||
| IGHV3-21*01 | 1444 | 1214 | 84.07 | 100.00 | 6.23 | 1376 | 1202 | IGHJ6 | 58:42 | ||
| IGHV3-23*04 | 1104 | 904 | 81.88 | 100.00 | 4.64 | 1047 | 896 | IGHJ6 | 1:99 | ||
| IGHV3-33*02 | 1 | 0 | 0.00 | 50.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV3-33*05 | 1 | 1 | 100.00 | 50.00 | 0.01 | 1 | 1 | IGHJ6 | |||
| IGHV3-43*01 | 125 | 102 | 81.60 | 100.00 | 0.52 | 118 | 102 | IGHJ6 | 86:14 | ||
| IGHV3-48*01 | 405 | 347 | 85.68 | 44.00 | 1.78 | 397 | 344 | IGHJ6 | 0:100 | ||
| IGHV3-48*04 | 509 | 425 | 83.50 | 56.00 | 2.18 | 485 | 422 | IGHJ6 | 100:0 | ||
| IGHV3-49*03 | 430 | 342 | 79.53 | 100.00 | 1.76 | 408 | 340 | IGHJ6 | 52:48 | ||
| IGHV3-52*02 | 1 | 1 | 100.00 | 100.00 | 0.01 | 1 | 1 | IGHJ6 | 0:100 | ||
| IGHV3-53*02 | 101 | 93 | 92.08 | 42.00 | 0.48 | 98 | 90 | IGHJ6 | 0:100 | ||
| IGHV3-53*04 | 140 | 123 | 87.86 | 58.00 | 0.63 | 136 | 123 | IGHJ6 | 100:0 | ||
| IGHV3-64*01 | 120 | 97 | 80.83 | 100.00 | 0.50 | 120 | 97 | IGHJ6 | 57:43 | ||
| IGHV3-66*02 | 606 | 487 | 80.36 | 100.00 | 2.50 | 566 | 483 | IGHJ6 | 56:44 | ||
| IGHV3-72*01 | 69 | 58 | 84.06 | 100.00 | 0.30 | 69 | 58 | IGHJ6 | 48:52 | ||
| IGHV3-73*01 | 195 | 164 | 84.10 | 100.00 | 0.84 | 185 | 161 | IGHJ6 | 35:65 | ||
| IGHV3-74*01 | 397 | 327 | 82.37 | 100.00 | 1.68 | 382 | 324 | IGHJ6 | 57:43 | ||
| IGHV3-64D*06 | 397 | 330 | 83.12 | 100.00 | 1.69 | 385 | 327 | IGHJ6 | 54:46 | ||
| IGHV4-4*02 | 304 | 264 | 86.84 | 100.00 | 1.36 | 298 | 262 | IGHJ6 | 2:98 | ||
| IGHV4-28*01 | 2 | 2 | 100.00 | 50.00 | 0.01 | 2 | 2 | IGHJ6 | |||
| IGHV4-28*03 | 2 | 0 | 0.00 | 50.00 | 0.00 | 2 | 0 | IGHJ6 | |||
| IGHV4-30-2*01 | 195 | 170 | 87.18 | 100.00 | 0.87 | 187 | 167 | IGHJ6 | 0:100 | ||
| IGHV4-31*11 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | 0:100 | ||
| IGHV4-34*01 | 2350 | 2078 | 88.43 | 100.00 | 10.67 | 2228 | 2044 | IGHJ6 | 49:51 | ||
| IGHV4-38-2*02 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV4-39*01 | 1201 | 1038 | 86.43 | 48.00 | 5.33 | 1145 | 1025 | IGHJ6 | 0:100 | ||
| IGHV4-39*07_C288A | 1304 | 1107 | 84.89 | 52.00 | 5.68 | 1229 | 1086 | IGHJ6 | 99:1 | ||
| IGHV4-59*01 | 958 | 806 | 84.13 | 72.00 | 4.14 | 930 | 795 | IGHJ6 | 48:52 | ||
| IGHV4-59*08 | 372 | 309 | 83.06 | 28.00 | 1.59 | 360 | 306 | IGHJ6 | 100:0 | ||
| IGHV4-61*02 | 771 | 668 | 86.64 | 100.00 | 3.43 | 750 | 661 | IGHJ6 | 0:100 | ||
| IGHV5-10-1*01 | 469 | 397 | 84.65 | 100.00 | 2.04 | 452 | 392 | IGHJ6 | 61:39 | ||
| IGHV5-51*01 | 556 | 495 | 89.03 | 54.00 | 2.54 | 547 | 492 | IGHJ6 | 100:0 | ||
| IGHV5-51*01_C45G | 469 | 415 | 88.49 | 46.00 | 2.13 | 458 | 411 | IGHJ6 | 0:100 | ||
| IGHV6-1*01 | 152 | 130 | 85.53 | 100.00 | 0.67 | 148 | 129 | IGHJ6 | 40:60 | ||
| IGHV7-4-1*02 | 452 | 393 | 86.95 | 100.00 | 2.02 | 436 | 390 | IGHJ6 | 51:49 | ||
| Totals | 22766 | 19476 | 85.55 | 1020:-920 |