Genotype 'P1_I90_S1' (Submission S00031)


Genotype Name	P1_I90_S1
Subject ID	S86
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I90_S1_ogrdbstats.csv
Tool/Settings	Tigger

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
ERS2445851	Naive B-Cell repertoire

Record Set	Title
ERX2585607	Illumina MiSeq paired end sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)	Sequence
IGHV4-3901_C66G*	1305	IGHV4-39*01	IGHV4-39*01	1	1	C66G	0
IGHV5-5101_C45G*	589	IGHV5-51*03	IGHV5-51*01	0	1	-319C,-320A	0

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
IGHV1-2*02	2051	1826	89.03	100.00	5.30	1980	1793	IGHJ6	54:46
IGHV1-3*02	6	4	66.67	100.00	0.01	5	3	IGHJ6	67:33
IGHV1-8*01	837	738	88.17	100.00	2.14	795	719	IGHJ6	2:98
IGHV1-18*01	1859	1658	89.19	100.00	4.81	1797	1626	IGHJ6	50:50
IGHV1-24*01	630	558	88.57	100.00	1.62	597	546	IGHJ6	64:36
IGHV1-45*02	10	9	90.00	100.00	0.03	10	9	IGHJ6
IGHV1-46*01	532	483	90.79	60.00	1.40	520	476	IGHJ6	4:96
IGHV1-46*03	348	319	91.67	40.00	0.93	335	310	IGHJ6	97:3
IGHV1-58*01	70	62	88.57	74.00	0.18	68	61	IGHJ6	0:100
IGHV1-58*02	24	20	83.33	26.00	0.06	24	20	IGHJ6	100:0
IGHV1-69-2*01	73	62	84.93	100.00	0.18	72	62	IGHJ6	0:100
IGHV1-69*02	625	554	88.64	38.00	1.61	591	538	IGHJ6	99:1
IGHV1-69*06	1007	887	88.08	62.00	2.57	960	868	IGHJ6	1:99
IGHV1-NL1*01	2	0	0.00	100.00	0.00	2	0	IGHJ6	0:100
IGHV2-5*02	999	888	88.89	100.00	2.58	964	876	IGHJ6	46:54
IGHV2-26*01	391	357	91.30	100.00	1.04	381	353	IGHJ6	30:70
IGHV2-70*01	83	71	85.54	100.00	0.21	79	69	IGHJ6	0:100
IGHV3-7*01	644	541	84.01	71.00	1.57	607	531	IGHJ6	1:99
IGHV3-7*04	261	215	82.38	29.00	0.62	245	209	IGHJ6	91:9
IGHV3-9*01	1449	1226	84.61	100.00	3.56	1338	1190	IGHJ6	0:100
IGHV3-11*01	594	458	77.10	62.00	1.33	567	445	IGHJ6	0:100
IGHV3-11*06	370	316	85.41	38.00	0.92	358	312	IGHJ6	100:0
IGHV3-13*01	152	135	88.82	66.00	0.39	147	134	IGHJ6	0:100
IGHV3-13*05	77	66	85.71	34.00	0.19	75	66	IGHJ6	100:0
IGHV3-15*01	1439	1228	85.34	100.00	3.56	1382	1211	IGHJ6	52:48
IGHV3-20*01	177	137	77.40	100.00	0.40	164	134	IGHJ6	24:76
IGHV3-21*01	2581	2228	86.32	100.00	6.46	2462	2187	IGHJ6	55:45
IGHV3-25*04	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV3-30-3*01	1338	1091	81.54	100.00	3.16	1261	1066	IGHJ6	2:98
IGHV3-33*01	3838	3135	81.68	100.00	9.09	3646	3062	IGHJ6	81:19
IGHV3-43*01	146	125	85.62	100.00	0.36	139	122	IGHJ6	66:34
IGHV3-48*01	499	425	85.17	49.00	1.23	482	417	IGHJ6	100:0
IGHV3-48*02	529	448	84.69	51.00	1.30	514	445	IGHJ6	5:95
IGHV3-49*03	181	151	83.43	52.00	0.44	178	151	IGHJ6	100:0
IGHV3-49*05	165	127	76.97	48.00	0.37	157	124	IGHJ6	0:100
IGHV3-52*01	2	0	0.00	100.00	0.00	2	0	IGHJ6
IGHV3-53*02	411	361	87.83	100.00	1.05	398	357	IGHJ6	70:30
IGHV3-64*01	79	66	83.54	100.00	0.19	74	64	IGHJ6	100:0
IGHV3-66*02	513	426	83.04	100.00	1.24	482	421	IGHJ6	99:1
IGHV3-71*03	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV3-72*01	87	67	77.01	100.00	0.19	84	67	IGHJ6	57:43
IGHV3-73*01	122	103	84.43	55.00	0.30	119	103	IGHJ6	100:0
IGHV3-73*02	98	73	74.49	45.00	0.21	93	73	IGHJ6	0:100
IGHV3-74*01	457	384	84.03	100.00	1.11	441	382	IGHJ6	73:27
IGHV3-64D*06	240	202	84.17	100.00	0.59	227	198	IGHJ6	100:0
IGHV3-NL1*01	1	0	0.00	100.00	0.00	1	0	IGHJ6	100:0
IGHV4-4*07	1026	882	85.96	100.00	2.56	992	868	IGHJ6	38:62
IGHV4-28*01	2	1	50.00	67.00	0.00	2	1	IGHJ6	100:0
IGHV4-28*03	1	1	100.00	33.00	0.00	1	1	IGHJ6
IGHV4-30-2*01	363	316	87.05	100.00	0.92	344	309	IGHJ6	0:100
IGHV4-30-4*01	369	319	86.45	100.00	0.93	362	316	IGHJ6	0:100
IGHV4-31*03	2284	1971	86.30	100.00	5.72	2197	1927	IGHJ6	76:24
IGHV4-34*01	2757	2445	88.68	100.00	7.09	2651	2408	IGHJ6	38:62
IGHV4-39*01	1428	1270	88.94	52.00	3.68	1387	1260	IGHJ6	100:0
IGHV4-3901_C66G*	1305	1135	86.97	48.00	3.29	1261	1131	IGHJ6	2:98
IGHV4-55*01	5	3	60.00	83.00	0.01	5	3	IGHJ6	0:100
IGHV4-55*08	1	0	0.00	17.00	0.00	1	0	IGHJ6
IGHV4-59*01	1228	1055	85.91	100.00	3.06	1197	1050	IGHJ6	54:46
IGHV4-61*01	155	133	85.81	11.00	0.39	152	133	IGHJ6	0:100
IGHV4-61*02	1265	1078	85.22	89.00	3.13	1230	1063	IGHJ6	100:0
IGHV5-10-1*03	533	467	87.62	100.00	1.35	515	460	IGHJ6	100:0
IGHV5-51*01	539	477	88.50	48.00	1.38	522	472	IGHJ6	0:100
IGHV5-5101_C45G*	589	525	89.13	52.00	1.52	576	523	IGHJ6	99:1
IGHV6-1*01	189	162	85.71	100.00	0.47	180	156	IGHJ6	69:31
IGHV7-81*01	2	2	100.00	100.00	0.01	2	2	IGHJ6
Totals	40040	34472	86.09						1781:-1681