Sample | Title |
---|---|
ERS2445851 | Naive B-Cell repertoire |
Record Set | Title |
---|---|
ERX2585607 | Illumina MiSeq paired end sequencing |
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
---|---|---|---|---|---|---|---|---|---|
IGHV4-39*01_C66G | 1305 | IGHV4-39*01 | IGHV4-39*01 | 1 | 1 | C66G | 0 | ||
IGHV5-51*01_C45G | 589 | IGHV5-51*03 | IGHV5-51*01 | 0 | 1 | -319C,-320A | 0 |
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
---|---|---|---|---|---|---|---|---|---|---|---|
IGHV1-2*02 | 2051 | 1826 | 89.03 | 100.00 | 5.30 | 1980 | 1793 | IGHJ6 | 54:46 | ||
IGHV1-3*02 | 6 | 4 | 66.67 | 100.00 | 0.01 | 5 | 3 | IGHJ6 | 67:33 | ||
IGHV1-8*01 | 837 | 738 | 88.17 | 100.00 | 2.14 | 795 | 719 | IGHJ6 | 2:98 | ||
IGHV1-18*01 | 1859 | 1658 | 89.19 | 100.00 | 4.81 | 1797 | 1626 | IGHJ6 | 50:50 | ||
IGHV1-24*01 | 630 | 558 | 88.57 | 100.00 | 1.62 | 597 | 546 | IGHJ6 | 64:36 | ||
IGHV1-45*02 | 10 | 9 | 90.00 | 100.00 | 0.03 | 10 | 9 | IGHJ6 | |||
IGHV1-46*01 | 532 | 483 | 90.79 | 60.00 | 1.40 | 520 | 476 | IGHJ6 | 4:96 | ||
IGHV1-46*03 | 348 | 319 | 91.67 | 40.00 | 0.93 | 335 | 310 | IGHJ6 | 97:3 | ||
IGHV1-58*01 | 70 | 62 | 88.57 | 74.00 | 0.18 | 68 | 61 | IGHJ6 | 0:100 | ||
IGHV1-58*02 | 24 | 20 | 83.33 | 26.00 | 0.06 | 24 | 20 | IGHJ6 | 100:0 | ||
IGHV1-69-2*01 | 73 | 62 | 84.93 | 100.00 | 0.18 | 72 | 62 | IGHJ6 | 0:100 | ||
IGHV1-69*02 | 625 | 554 | 88.64 | 38.00 | 1.61 | 591 | 538 | IGHJ6 | 99:1 | ||
IGHV1-69*06 | 1007 | 887 | 88.08 | 62.00 | 2.57 | 960 | 868 | IGHJ6 | 1:99 | ||
IGHV1-NL1*01 | 2 | 0 | 0.00 | 100.00 | 0.00 | 2 | 0 | IGHJ6 | 0:100 | ||
IGHV2-5*02 | 999 | 888 | 88.89 | 100.00 | 2.58 | 964 | 876 | IGHJ6 | 46:54 | ||
IGHV2-26*01 | 391 | 357 | 91.30 | 100.00 | 1.04 | 381 | 353 | IGHJ6 | 30:70 | ||
IGHV2-70*01 | 83 | 71 | 85.54 | 100.00 | 0.21 | 79 | 69 | IGHJ6 | 0:100 | ||
IGHV3-7*01 | 644 | 541 | 84.01 | 71.00 | 1.57 | 607 | 531 | IGHJ6 | 1:99 | ||
IGHV3-7*04 | 261 | 215 | 82.38 | 29.00 | 0.62 | 245 | 209 | IGHJ6 | 91:9 | ||
IGHV3-9*01 | 1449 | 1226 | 84.61 | 100.00 | 3.56 | 1338 | 1190 | IGHJ6 | 0:100 | ||
IGHV3-11*01 | 594 | 458 | 77.10 | 62.00 | 1.33 | 567 | 445 | IGHJ6 | 0:100 | ||
IGHV3-11*06 | 370 | 316 | 85.41 | 38.00 | 0.92 | 358 | 312 | IGHJ6 | 100:0 | ||
IGHV3-13*01 | 152 | 135 | 88.82 | 66.00 | 0.39 | 147 | 134 | IGHJ6 | 0:100 | ||
IGHV3-13*05 | 77 | 66 | 85.71 | 34.00 | 0.19 | 75 | 66 | IGHJ6 | 100:0 | ||
IGHV3-15*01 | 1439 | 1228 | 85.34 | 100.00 | 3.56 | 1382 | 1211 | IGHJ6 | 52:48 | ||
IGHV3-20*01 | 177 | 137 | 77.40 | 100.00 | 0.40 | 164 | 134 | IGHJ6 | 24:76 | ||
IGHV3-21*01 | 2581 | 2228 | 86.32 | 100.00 | 6.46 | 2462 | 2187 | IGHJ6 | 55:45 | ||
IGHV3-25*04 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
IGHV3-30-3*01 | 1338 | 1091 | 81.54 | 100.00 | 3.16 | 1261 | 1066 | IGHJ6 | 2:98 | ||
IGHV3-33*01 | 3838 | 3135 | 81.68 | 100.00 | 9.09 | 3646 | 3062 | IGHJ6 | 81:19 | ||
IGHV3-43*01 | 146 | 125 | 85.62 | 100.00 | 0.36 | 139 | 122 | IGHJ6 | 66:34 | ||
IGHV3-48*01 | 499 | 425 | 85.17 | 49.00 | 1.23 | 482 | 417 | IGHJ6 | 100:0 | ||
IGHV3-48*02 | 529 | 448 | 84.69 | 51.00 | 1.30 | 514 | 445 | IGHJ6 | 5:95 | ||
IGHV3-49*03 | 181 | 151 | 83.43 | 52.00 | 0.44 | 178 | 151 | IGHJ6 | 100:0 | ||
IGHV3-49*05 | 165 | 127 | 76.97 | 48.00 | 0.37 | 157 | 124 | IGHJ6 | 0:100 | ||
IGHV3-52*01 | 2 | 0 | 0.00 | 100.00 | 0.00 | 2 | 0 | IGHJ6 | |||
IGHV3-53*02 | 411 | 361 | 87.83 | 100.00 | 1.05 | 398 | 357 | IGHJ6 | 70:30 | ||
IGHV3-64*01 | 79 | 66 | 83.54 | 100.00 | 0.19 | 74 | 64 | IGHJ6 | 100:0 | ||
IGHV3-66*02 | 513 | 426 | 83.04 | 100.00 | 1.24 | 482 | 421 | IGHJ6 | 99:1 | ||
IGHV3-71*03 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
IGHV3-72*01 | 87 | 67 | 77.01 | 100.00 | 0.19 | 84 | 67 | IGHJ6 | 57:43 | ||
IGHV3-73*01 | 122 | 103 | 84.43 | 55.00 | 0.30 | 119 | 103 | IGHJ6 | 100:0 | ||
IGHV3-73*02 | 98 | 73 | 74.49 | 45.00 | 0.21 | 93 | 73 | IGHJ6 | 0:100 | ||
IGHV3-74*01 | 457 | 384 | 84.03 | 100.00 | 1.11 | 441 | 382 | IGHJ6 | 73:27 | ||
IGHV3-64D*06 | 240 | 202 | 84.17 | 100.00 | 0.59 | 227 | 198 | IGHJ6 | 100:0 | ||
IGHV3-NL1*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | 100:0 | ||
IGHV4-4*07 | 1026 | 882 | 85.96 | 100.00 | 2.56 | 992 | 868 | IGHJ6 | 38:62 | ||
IGHV4-28*01 | 2 | 1 | 50.00 | 67.00 | 0.00 | 2 | 1 | IGHJ6 | 100:0 | ||
IGHV4-28*03 | 1 | 1 | 100.00 | 33.00 | 0.00 | 1 | 1 | IGHJ6 | |||
IGHV4-30-2*01 | 363 | 316 | 87.05 | 100.00 | 0.92 | 344 | 309 | IGHJ6 | 0:100 | ||
IGHV4-30-4*01 | 369 | 319 | 86.45 | 100.00 | 0.93 | 362 | 316 | IGHJ6 | 0:100 | ||
IGHV4-31*03 | 2284 | 1971 | 86.30 | 100.00 | 5.72 | 2197 | 1927 | IGHJ6 | 76:24 | ||
IGHV4-34*01 | 2757 | 2445 | 88.68 | 100.00 | 7.09 | 2651 | 2408 | IGHJ6 | 38:62 | ||
IGHV4-39*01 | 1428 | 1270 | 88.94 | 52.00 | 3.68 | 1387 | 1260 | IGHJ6 | 100:0 | ||
IGHV4-39*01_C66G | 1305 | 1135 | 86.97 | 48.00 | 3.29 | 1261 | 1131 | IGHJ6 | 2:98 | ||
IGHV4-55*01 | 5 | 3 | 60.00 | 83.00 | 0.01 | 5 | 3 | IGHJ6 | 0:100 | ||
IGHV4-55*08 | 1 | 0 | 0.00 | 17.00 | 0.00 | 1 | 0 | IGHJ6 | |||
IGHV4-59*01 | 1228 | 1055 | 85.91 | 100.00 | 3.06 | 1197 | 1050 | IGHJ6 | 54:46 | ||
IGHV4-61*01 | 155 | 133 | 85.81 | 11.00 | 0.39 | 152 | 133 | IGHJ6 | 0:100 | ||
IGHV4-61*02 | 1265 | 1078 | 85.22 | 89.00 | 3.13 | 1230 | 1063 | IGHJ6 | 100:0 | ||
IGHV5-10-1*03 | 533 | 467 | 87.62 | 100.00 | 1.35 | 515 | 460 | IGHJ6 | 100:0 | ||
IGHV5-51*01 | 539 | 477 | 88.50 | 48.00 | 1.38 | 522 | 472 | IGHJ6 | 0:100 | ||
IGHV5-51*01_C45G | 589 | 525 | 89.13 | 52.00 | 1.52 | 576 | 523 | IGHJ6 | 99:1 | ||
IGHV6-1*01 | 189 | 162 | 85.71 | 100.00 | 0.47 | 180 | 156 | IGHJ6 | 69:31 | ||
IGHV7-81*01 | 2 | 2 | 100.00 | 100.00 | 0.01 | 2 | 2 | IGHJ6 | |||
Totals | 40040 | 34472 | 86.09 | 1781:-1681 |