OGRDB

Genotype 'P1_I46_S1' (Submission S00031)


Genotype Name	P1_I46_S1
Subject ID	S43
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I46_S1_ogrdbstats.csv
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NCBI Information

Sample	Title
ERS2445808	Naive B-Cell repertoire

Record Set	Title
ERX2585564	Illumina MiSeq paired end sequencing

Legend:

Allele names in italic are not listed in the reference set.
Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)	Sequence
IGHV3-3301_G75C*	409	IGHV3-33*01	IGHV3-33*01	1	1	G75C	0
IGHV4-5908*	250

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
IGHV1-2*02	553	434	78.48	100.00	2.92	544	428	IGHJ6	91:9
IGHV1-3*01	203	180	88.67	100.00	1.21	200	178	IGHJ6	0:100
IGHV1-8*01	373	332	89.01	100.00	2.24	361	328	IGHJ6	99:1
IGHV1-18*04	679	609	89.69	100.00	4.10	665	602	IGHJ6	66:34
IGHV1-24*01	194	177	91.24	100.00	1.19	191	175	IGHJ6	55:45
IGHV1-45*02	4	3	75.00	100.00	0.02	4	3	IGHJ6	100:0
IGHV1-46*01	621	555	89.37	100.00	3.74	608	552	IGHJ6	73:27
IGHV1-58*01	38	31	81.58	72.00	0.21	38	31	IGHJ6	92:8
IGHV1-58*02	15	13	86.67	28.00	0.09	15	13	IGHJ6	0:100
IGHV1-69-2*01	25	21	84.00	100.00	0.14	24	20	IGHJ6	100:0
IGHV1-69*04	309	273	88.35	44.00	1.84	303	270	IGHJ6	0:100
IGHV1-69*06	393	347	88.30	56.00	2.34	378	343	IGHJ6	100:0
IGHV2-5*01	184	164	89.13	71.00	1.10	181	163	IGHJ6	100:0
IGHV2-5*02	76	60	78.95	29.00	0.40	74	60	IGHJ6	0:100
IGHV2-26*01	198	176	88.89	100.00	1.19	195	176	IGHJ6	50:50
IGHV2-70*15	90	89	98.89	100.00	0.60	90	89	IGHJ6	44:56
IGHV2-70D*04	11	11	100.00	100.00	0.07	11	11	IGHJ6	100:0
IGHV3-7*01	399	329	82.46	65.00	2.22	380	325	IGHJ6	99:1
IGHV3-7*03	213	162	76.06	35.00	1.09	201	161	IGHJ6	0:100
IGHV3-9*01	800	665	83.12	100.00	4.48	765	658	IGHJ6	100:0
IGHV3-11*01	339	263	77.58	75.00	1.77	329	260	IGHJ6	100:0
IGHV3-11*06	115	100	86.96	25.00	0.67	112	99	IGHJ6	0:100
IGHV3-13*01	86	79	91.86	72.00	0.53	82	78	IGHJ6	100:0
IGHV3-13*05	33	27	81.82	28.00	0.18	31	27	IGHJ6	0:100
IGHV3-15*01	732	625	85.38	100.00	4.21	719	620	IGHJ6	59:41
IGHV3-20*01	34	29	85.29	100.00	0.20	32	29	IGHJ6	100:0
IGHV3-21*01	1333	1163	87.25	100.00	7.83	1283	1150	IGHJ6	60:40
IGHV3-23*04	751	622	82.82	100.00	4.19	728	621	IGHJ6	1:99
IGHV3-33*01	487	400	82.14	54.00	2.69	472	394	IGHJ6	99:1
IGHV3-3301_G75C*	409	323	78.97	46.00	2.18	388	318	IGHJ6	2:98
IGHV3-35*01	2	2	100.00	100.00	0.01	2	2	IGHJ6	0:100
IGHV3-43*01	103	91	88.35	100.00	0.61	98	89	IGHJ6	80:20
IGHV3-48*01	372	319	85.75	45.00	2.15	362	315	IGHJ6	100:0
IGHV3-48*03	446	365	81.84	55.00	2.46	433	363	IGHJ6	1:99
IGHV3-49*03	136	103	75.74	45.00	0.69	129	103	IGHJ6	100:0
IGHV3-49*04	168	129	76.79	55.00	0.87	159	127	IGHJ6	4:96
IGHV3-53*01	188	162	86.17	73.00	1.09	183	162	IGHJ6	98:2
IGHV3-53*02	70	65	92.86	27.00	0.44	69	65	IGHJ6	0:100
IGHV3-64*01	42	32	76.19	100.00	0.22	42	32	IGHJ6	7:93
IGHV3-66*01	221	177	80.09	100.00	1.19	205	177	IGHJ6	0:100
IGHV3-69-1*01	1	1	100.00	100.00	0.01	1	1	IGHJ6	100:0
IGHV3-72*01	29	24	82.76	100.00	0.16	29	24	IGHJ6	71:29
IGHV3-73*01	57	42	73.68	40.00	0.28	55	42	IGHJ6	0:100
IGHV3-73*02	84	69	82.14	60.00	0.46	83	69	IGHJ6	100:0
IGHV3-74*01	192	170	88.54	100.00	1.14	183	166	IGHJ6	47:53
IGHV3-64D*06	129	108	83.72	100.00	0.73	124	106	IGHJ6	0:100
IGHV4-4*02	207	187	90.34	49.00	1.26	203	187	IGHJ6	0:100
IGHV4-4*07	213	183	85.92	51.00	1.23	210	183	IGHJ6	100:0
IGHV4-28*03	1	1	100.00	100.00	0.01	1	1	IGHJ6
IGHV4-30-4*07	1	0	0.00	100.00	0.00	1	0	IGHJ6
IGHV4-31*03	370	326	88.11	100.00	2.20	350	322	IGHJ6	100:0
IGHV4-34*01	1203	1075	89.36	100.00	7.24	1171	1060	IGHJ6	40:60
IGHV4-39*01	1718	1509	87.83	100.00	10.16	1656	1485	IGHJ6	49:51
IGHV4-55*09	1	1	100.00	100.00	0.01	1	1	IGHJ6
IGHV4-59*01	500	420	84.00	67.00	2.83	486	418	IGHJ6	44:56
IGHV4-5908*	250	207	82.80	33.00	1.39	243	205	IGHJ6	2:98
IGHV4-61*01	80	68	85.00	100.00	0.46	80	68	IGHJ6	100:0
IGHV5-10-1*03	156	140	89.74	100.00	0.94	152	138	IGHJ6	2:98
IGHV5-51*01	537	494	91.99	100.00	3.33	526	489	IGHJ6	46:54
IGHV6-1*01	122	114	93.44	100.00	0.77	121	113	IGHJ6	46:54
IGHV7-4-1*01	5	3	60.00	100.00	0.02	5	3	IGHJ6	0:100
Totals	17301	14849	85.83						1517:-1417