Genotype 'P1_I49_S1' (Submission S00031)
NCBI Information
| Sample | Title |
|---|---|
| ERS2445811 | Naive B-Cell repertoire |
| Record Set | Title |
|---|---|
| ERX2585567 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-69*08_C191T | 81 | IGHV1-69*02 | IGHV1-69*10 | 0 | 4 | -319G,-320A | 0 | ||
| IGHV3-30*19_T189C | 357 | IGHV3-30*19 | IGHV3-30-3*01 | 1 | 3 | T189C | 0 | ||
| IGHV4-59*08 | 328 | ||||||||
| IGHV5-51*01_C45G | 273 | IGHV5-51*03 | IGHV4-61*07 | 0 | 77 | -319C,-320A | 0 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*02 | 171 | 65 | 38.01 | 45.00 | 1.55 | 158 | 65 | IGHJ6 | 4:96 | ||
| IGHV1-2*06 | 208 | 92 | 44.23 | 55.00 | 2.20 | 202 | 92 | IGHJ6 | 100:0 | ||
| IGHV1-3*01 | 189 | 48 | 25.40 | 100.00 | 1.15 | 169 | 48 | IGHJ6 | 100:0 | ||
| IGHV1-8*01 | 227 | 103 | 45.37 | 100.00 | 2.46 | 212 | 102 | IGHJ6 | 49:51 | ||
| IGHV1-18*01 | 258 | 100 | 38.76 | 100.00 | 2.39 | 241 | 99 | IGHJ6 | 61:39 | ||
| IGHV1-24*01 | 36 | 22 | 61.11 | 100.00 | 0.53 | 36 | 22 | IGHJ6 | 67:33 | ||
| IGHV1-45*02 | 1 | 1 | 100.00 | 100.00 | 0.02 | 1 | 1 | IGHJ6 | 100:0 | ||
| IGHV1-46*01 | 185 | 61 | 32.97 | 76.00 | 1.46 | 173 | 60 | IGHJ6 | 100:0 | ||
| IGHV1-46*03 | 59 | 23 | 38.98 | 24.00 | 0.55 | 55 | 22 | IGHJ6 | 8:92 | ||
| IGHV1-58*02 | 21 | 4 | 19.05 | 100.00 | 0.10 | 19 | 4 | IGHJ6 | 50:50 | ||
| IGHV1-68*02 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV1-69*10 | 135 | 84 | 62.22 | 62.00 | 2.01 | 127 | 84 | IGHJ6 | 100:0 | ||
| IGHV1-69*08_C191T | 81 | 58 | 71.60 | 38.00 | 1.39 | 77 | 58 | IGHJ6 | 0:100 | ||
| IGHV1-69D*01 | 3 | 2 | 66.67 | 100.00 | 0.05 | 3 | 2 | IGHJ6 | 100:0 | ||
| IGHV1-NL1*01 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV2-5*01 | 48 | 14 | 29.17 | 22.00 | 0.33 | 46 | 14 | IGHJ6 | 33:67 | ||
| IGHV2-5*02 | 174 | 60 | 34.48 | 78.00 | 1.43 | 167 | 60 | IGHJ6 | 100:0 | ||
| IGHV2-26*01 | 42 | 22 | 52.38 | 100.00 | 0.53 | 38 | 21 | IGHJ6 | 20:80 | ||
| IGHV2-70*15 | 35 | 12 | 34.29 | 100.00 | 0.29 | 35 | 12 | IGHJ6 | 0:100 | ||
| IGHV3-7*01 | 288 | 95 | 32.99 | 100.00 | 2.27 | 262 | 95 | IGHJ6 | 52:48 | ||
| IGHV3-9*01 | 693 | 251 | 36.22 | 100.00 | 6.00 | 620 | 248 | IGHJ6 | 66:34 | ||
| IGHV3-11*01 | 263 | 99 | 37.64 | 100.00 | 2.37 | 242 | 99 | IGHJ6 | 56:44 | ||
| IGHV3-13*01 | 46 | 24 | 52.17 | 100.00 | 0.57 | 44 | 24 | IGHJ6 | 71:29 | ||
| IGHV3-15*01 | 269 | 99 | 36.80 | 100.00 | 2.37 | 236 | 97 | IGHJ6 | 46:54 | ||
| IGHV3-20*01 | 129 | 37 | 28.68 | 100.00 | 0.88 | 105 | 33 | IGHJ6 | 53:47 | ||
| IGHV3-21*01 | 590 | 243 | 41.19 | 100.00 | 5.81 | 546 | 242 | IGHJ6 | 56:44 | ||
| IGHV3-30-3*01 | 141 | 60 | 42.55 | 100.00 | 1.43 | 131 | 59 | IGHJ6 | 0:100 | ||
| IGHV3-30*19_T189C | 357 | 117 | 32.77 | 100.00 | 2.80 | 325 | 116 | IGHJ6 | 100:0 | ||
| IGHV3-33*01 | 540 | 205 | 37.96 | 100.00 | 4.90 | 474 | 200 | IGHJ6 | 56:44 | ||
| IGHV3-43*01 | 30 | 13 | 43.33 | 100.00 | 0.31 | 28 | 13 | IGHJ6 | 50:50 | ||
| IGHV3-48*01 | 98 | 30 | 30.61 | 22.00 | 0.72 | 90 | 30 | IGHJ6 | 0:100 | ||
| IGHV3-48*03 | 346 | 100 | 28.90 | 78.00 | 2.39 | 310 | 99 | IGHJ6 | 100:0 | ||
| IGHV3-49*03 | 24 | 11 | 45.83 | 26.00 | 0.26 | 21 | 11 | IGHJ6 | |||
| IGHV3-49*04 | 68 | 24 | 35.29 | 74.00 | 0.57 | 65 | 24 | IGHJ6 | 100:0 | ||
| IGHV3-53*01 | 209 | 72 | 34.45 | 100.00 | 1.72 | 192 | 71 | IGHJ6 | 75:25 | ||
| IGHV3-64*01 | 72 | 20 | 27.78 | 100.00 | 0.48 | 67 | 20 | IGHJ6 | 71:29 | ||
| IGHV3-66*01 | 105 | 36 | 34.29 | 100.00 | 0.86 | 96 | 35 | IGHJ6 | 0:100 | ||
| IGHV3-71*02 | 1 | 0 | 0.00 | 50.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV3-71*03 | 1 | 1 | 100.00 | 50.00 | 0.02 | 1 | 1 | IGHJ6 | |||
| IGHV3-72*01 | 15 | 4 | 26.67 | 100.00 | 0.10 | 15 | 4 | IGHJ6 | 50:50 | ||
| IGHV3-73*01 | 76 | 35 | 46.05 | 100.00 | 0.84 | 68 | 34 | IGHJ6 | 88:12 | ||
| IGHV3-74*01 | 139 | 41 | 29.50 | 100.00 | 0.98 | 132 | 41 | IGHJ6 | 53:47 | ||
| IGHV4-4*02 | 213 | 68 | 31.92 | 77.00 | 1.63 | 192 | 68 | IGHJ6 | 100:0 | ||
| IGHV4-4*07 | 63 | 22 | 34.92 | 23.00 | 0.53 | 53 | 20 | IGHJ6 | 0:100 | ||
| IGHV4-28*01 | 1 | 1 | 100.00 | 50.00 | 0.02 | 1 | 1 | IGHJ6 | |||
| IGHV4-28*03 | 1 | 0 | 0.00 | 50.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV4-30-2*01 | 65 | 27 | 41.54 | 100.00 | 0.65 | 63 | 26 | IGHJ6 | 0:100 | ||
| IGHV4-30-4*05 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | IGHJ6 | |||
| IGHV4-31*03 | 262 | 113 | 43.13 | 100.00 | 2.70 | 249 | 112 | IGHJ6 | 76:24 | ||
| IGHV4-34*01 | 1733 | 886 | 51.13 | 100.00 | 21.19 | 1513 | 850 | IGHJ6 | 40:60 | ||
| IGHV4-39*01 | 620 | 263 | 42.42 | 100.00 | 6.29 | 571 | 258 | IGHJ6 | 45:55 | ||
| IGHV4-59*01 | 348 | 133 | 38.22 | 51.00 | 3.18 | 318 | 132 | IGHJ6 | 38:62 | ||
| IGHV4-59*08 | 328 | 100 | 30.49 | 49.00 | 2.39 | 291 | 98 | IGHJ6 | 47:53 | ||
| IGHV4-61*07 | 2 | 1 | 50.00 | 100.00 | 0.02 | 2 | 1 | IGHJ6 | 0:100 | ||
| IGHV5-51*01_C45G | 273 | 112 | 41.03 | 100.00 | 2.68 | 258 | 112 | IGHJ6 | 62:38 | ||
| IGHV6-1*01 | 37 | 17 | 45.95 | 100.00 | 0.41 | 33 | 17 | IGHJ6 | 44:56 | ||
| IGHV7-4-1*02 | 161 | 51 | 31.68 | 100.00 | 1.22 | 146 | 50 | IGHJ6 | 93:7 | ||
| Totals | 10483 | 4182 | 39.89 | 1176:-1076 |