OGRDB

Genotype 'P1_I50_S1' (Submission S00031)


Genotype Name	P1_I50_S1
Subject ID	S47
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I50_S1_ogrdbstats.csv
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NCBI Information

Sample	Title
ERS2445812	Naive B-Cell repertoire

Record Set	Title
ERR2567224	Illumina MiSeq paired end sequencing

Legend:

Allele names in italic are not listed in the reference set.
Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
IGHV1-6904_C184T*	121	IGHV1-69*04	IGHV1-69*04	1	1	C184T	1	L62F
IGHV3-30-301_A152G*	52	IGHV3-30-3*01	IGHV3-30-3*01	1	1	A152G	1	E51G
IGHV4-5908*	91

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated
IGHV1-2*04	42	35	83.33	28.00	0.79	42	35
IGHV1-2*06	106	86	81.13	72.00	1.93	105	86
IGHV1-3*01	96	80	83.33	100.00	1.80	95	80
IGHV1-8*01	64	55	85.94	100.00	1.24	64	55
IGHV1-18*01	180	154	85.56	100.00	3.46	179	154
IGHV1-24*01	31	25	80.65	100.00	0.56	31	25
IGHV1-46*01	54	42	77.78	51.00	0.94	53	42
IGHV1-46*03	52	46	88.46	49.00	1.03	51	46
IGHV1-58*02	15	15	100.00	100.00	0.34	15	15
IGHV1-69-2*01	25	21	84.00	100.00	0.47	25	21
IGHV1-69*02	57	48	84.21	19.00	1.08	55	47
IGHV1-69*04	96	87	90.62	31.00	1.96	95	87
IGHV1-69*08	32	0	0.00	10.00	0.00	31	0
IGHV1-6904_C184T*	121	108	89.26	40.00	2.43	121	108
IGHV2-5*02	102	85	83.33	100.00	1.91	102	85
IGHV2-26*01	46	37	80.43	100.00	0.83	45	37
IGHV2-70*15	9	9	100.00	100.00	0.20	9	9
IGHV2-70D*04	1	0	0.00	100.00	0.00	1	0
IGHV3-7*01	80	52	65.00	52.00	1.17	77	52
IGHV3-7*03	75	55	73.33	48.00	1.24	72	53
IGHV3-9*01	251	186	74.10	100.00	4.18	247	186
IGHV3-11*01	67	39	58.21	52.00	0.88	64	39
IGHV3-11*06	61	40	65.57	48.00	0.90	59	40
IGHV3-13*01	23	18	78.26	79.00	0.40	23	18
IGHV3-13*05	6	5	83.33	21.00	0.11	5	4
IGHV3-15*01	183	129	70.49	100.00	2.90	176	128
IGHV3-20*01	8	5	62.50	100.00	0.11	8	5
IGHV3-21*01	472	360	76.27	100.00	8.09	462	359
IGHV3-30-3*01	381	285	74.80	88.00	6.41	376	284
IGHV3-30-301_A152G*	52	40	76.92	12.00	0.90	52	40
IGHV3-33*01	298	202	67.79	100.00	4.54	292	202
IGHV3-43*01	10	7	70.00	13.00	0.16	10	7
IGHV3-43*02	68	56	82.35	87.00	1.26	67	56
IGHV3-48*01	85	66	77.65	36.00	1.48	84	66
IGHV3-48*03	148	103	69.59	64.00	2.32	144	103
IGHV3-49*03	44	29	65.91	47.00	0.65	43	29
IGHV3-49*04	50	34	68.00	53.00	0.76	49	34
IGHV3-53*01	60	45	75.00	73.00	1.01	59	45
IGHV3-53*04	22	18	81.82	27.00	0.40	21	18
IGHV3-64*01	30	27	90.00	100.00	0.61	28	26
IGHV3-66*01	86	58	67.44	57.00	1.30	80	58
IGHV3-66*02	66	46	69.70	43.00	1.03	65	46
IGHV3-69-1*02	1	1	100.00	100.00	0.02	1	1
IGHV3-72*01	13	10	76.92	100.00	0.22	13	10
IGHV3-73*01	43	30	69.77	100.00	0.67	43	30
IGHV3-74*01	60	50	83.33	100.00	1.12	59	50
IGHV3-64D*06	71	60	84.51	100.00	1.35	71	60
IGHV4-4*02	99	80	80.81	100.00	1.80	97	80
IGHV4-28*03	1	1	100.00	100.00	0.02	1	1
IGHV4-30-2*01	58	41	70.69	100.00	0.92	56	41
IGHV4-30-4*01	78	58	74.36	100.00	1.30	78	58
IGHV4-31*03	113	79	69.91	100.00	1.78	110	79
IGHV4-34*01	376	330	87.77	100.00	7.42	372	329
IGHV4-38-2*02	2	1	50.00	100.00	0.02	2	1
IGHV4-39*01	330	265	80.30	100.00	5.96	324	263
IGHV4-59*01	159	129	81.13	64.00	2.90	155	129
IGHV4-5908*	91	77	84.62	36.00	1.73	89	77
IGHV4-61*02	147	99	67.35	100.00	2.23	141	99
IGHV5-10-1*03	84	75	89.29	100.00	1.69	83	74
IGHV5-51*01	119	93	78.15	69.00	2.09	119	93
IGHV5-51*03	53	43	81.13	31.00	0.97	52	43
IGHV6-1*01	54	47	87.04	100.00	1.06	54	47
IGHV7-4-1*02	54	42	77.78	100.00	0.94	53	42
Totals	5761	4449	77.23