Genotype 'P1_I80_S1' (Submission S00031)
NCBI Information
| Sample | Title |
|---|---|
| ERS2445841 | Naive B-Cell repertoire |
| Record Set | Title |
|---|---|
| ERR2567253 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV3-21*01_A184G_T190A_A191C | 1306 | IGHV3-21*01 | IGHV3-21*01 | 3 | 3 | A184G,T190A,A191C | 2 | S62G,Y64T |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*04 | 1023 | 874 | 85.43 | 100.00 | 2.32 | 964 | 860 | ||||
| IGHV1-3*01 | 926 | 804 | 86.83 | 100.00 | 2.13 | 878 | 787 | ||||
| IGHV1-18*01 | 841 | 735 | 87.40 | 52.00 | 1.95 | 813 | 728 | ||||
| IGHV1-18*04 | 777 | 668 | 85.97 | 48.00 | 1.77 | 743 | 659 | ||||
| IGHV1-24*01 | 755 | 661 | 87.55 | 100.00 | 1.75 | 726 | 650 | ||||
| IGHV1-45*02 | 9 | 8 | 88.89 | 100.00 | 0.02 | 9 | 8 | ||||
| IGHV1-46*01 | 581 | 509 | 87.61 | 54.00 | 1.35 | 550 | 496 | ||||
| IGHV1-46*03 | 499 | 435 | 87.17 | 46.00 | 1.15 | 476 | 425 | ||||
| IGHV1-58*01 | 149 | 130 | 87.25 | 68.00 | 0.34 | 143 | 127 | ||||
| IGHV1-58*02 | 69 | 56 | 81.16 | 32.00 | 0.15 | 69 | 56 | ||||
| IGHV1-69*02 | 798 | 690 | 86.47 | 100.00 | 1.83 | 751 | 673 | ||||
| IGHV1-NL1*01 | 4 | 4 | 100.00 | 100.00 | 0.01 | 4 | 4 | ||||
| IGHV2-5*02 | 650 | 546 | 84.00 | 100.00 | 1.45 | 616 | 535 | ||||
| IGHV2-26*01 | 492 | 439 | 89.23 | 100.00 | 1.16 | 465 | 431 | ||||
| IGHV2-70*01 | 237 | 213 | 89.87 | 100.00 | 0.56 | 234 | 212 | ||||
| IGHV2-70D*04 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| IGHV3-7*03 | 904 | 759 | 83.96 | 100.00 | 2.01 | 861 | 742 | ||||
| IGHV3-11*06 | 654 | 543 | 83.03 | 100.00 | 1.44 | 613 | 533 | ||||
| IGHV3-13*05 | 144 | 118 | 81.94 | 100.00 | 0.31 | 134 | 117 | ||||
| IGHV3-15*01 | 1360 | 1155 | 84.93 | 100.00 | 3.06 | 1291 | 1125 | ||||
| IGHV3-19*01 | 1 | 1 | 100.00 | 100.00 | 0.00 | 1 | 1 | ||||
| IGHV3-20*02 | 5 | 4 | 80.00 | 100.00 | 0.01 | 4 | 4 | ||||
| IGHV3-21*01 | 1155 | 950 | 82.25 | 47.00 | 2.52 | 1085 | 937 | ||||
| IGHV3-21*01_A184G_T190A_A191C | 1306 | 1092 | 83.61 | 53.00 | 2.90 | 1225 | 1069 | ||||
| IGHV3-23*04 | 3031 | 2488 | 82.09 | 100.00 | 6.60 | 2882 | 2469 | ||||
| IGHV3-30-3*01 | 1 | 0 | 0.00 | 11.00 | 0.00 | 1 | 0 | ||||
| IGHV3-30*01 | 2770 | 2298 | 82.96 | 100.00 | 6.09 | 2626 | 2242 | ||||
| IGHV3-30-3*03 | 8 | 2 | 25.00 | 89.00 | 0.01 | 8 | 2 | ||||
| IGHV3-33*01 | 2554 | 2094 | 81.99 | 100.00 | 5.55 | 2366 | 2021 | ||||
| IGHV3-35*01 | 2 | 1 | 50.00 | 100.00 | 0.00 | 2 | 1 | ||||
| IGHV3-38-3*01 | 1 | 1 | 100.00 | 100.00 | 0.00 | 1 | 1 | ||||
| IGHV3-41*02 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| IGHV3-43*01 | 114 | 96 | 84.21 | 100.00 | 0.25 | 111 | 96 | ||||
| IGHV3-47*02 | 1 | 1 | 100.00 | 100.00 | 0.00 | 1 | 1 | ||||
| IGHV3-48*02 | 763 | 627 | 82.18 | 35.00 | 1.66 | 723 | 614 | ||||
| IGHV3-48*03 | 1416 | 1213 | 85.66 | 65.00 | 3.22 | 1368 | 1208 | ||||
| IGHV3-49*04 | 838 | 705 | 84.13 | 100.00 | 1.87 | 786 | 682 | ||||
| IGHV3-52*01 | 3 | 0 | 0.00 | 100.00 | 0.00 | 3 | 0 | ||||
| IGHV3-53*02 | 237 | 206 | 86.92 | 52.00 | 0.55 | 225 | 202 | ||||
| IGHV3-53*04 | 223 | 195 | 87.44 | 48.00 | 0.52 | 212 | 191 | ||||
| IGHV3-64*01 | 108 | 87 | 80.56 | 100.00 | 0.23 | 101 | 85 | ||||
| IGHV3-66*02 | 448 | 382 | 85.27 | 100.00 | 1.01 | 418 | 374 | ||||
| IGHV3-72*01 | 80 | 60 | 75.00 | 100.00 | 0.16 | 77 | 59 | ||||
| IGHV3-73*01 | 94 | 79 | 84.04 | 44.00 | 0.21 | 89 | 79 | ||||
| IGHV3-73*02 | 119 | 105 | 88.24 | 56.00 | 0.28 | 116 | 105 | ||||
| IGHV3-74*01 | 519 | 444 | 85.55 | 100.00 | 1.18 | 501 | 435 | ||||
| IGHV3-43D*03 | 224 | 184 | 82.14 | 71.00 | 0.49 | 210 | 181 | ||||
| IGHV3-43D*04 | 91 | 77 | 84.62 | 29.00 | 0.20 | 87 | 77 | ||||
| IGHV3-64D*06 | 596 | 513 | 86.07 | 100.00 | 1.36 | 556 | 497 | ||||
| IGHV4-4*02 | 1077 | 928 | 86.17 | 100.00 | 2.46 | 1029 | 907 | ||||
| IGHV4-28*04 | 2 | 0 | 0.00 | 67.00 | 0.00 | 2 | 0 | ||||
| IGHV4-28*06 | 1 | 0 | 0.00 | 33.00 | 0.00 | 1 | 0 | ||||
| IGHV4-30-2*04 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
| IGHV4-31*01 | 413 | 360 | 87.17 | 100.00 | 0.95 | 389 | 348 | ||||
| IGHV4-34*01 | 3830 | 3366 | 87.89 | 100.00 | 8.92 | 3560 | 3258 | ||||
| IGHV4-38-2*01 | 526 | 452 | 85.93 | 29.00 | 1.20 | 494 | 449 | ||||
| IGHV4-38-2*02 | 1290 | 781 | 60.54 | 71.00 | 2.07 | 1197 | 763 | ||||
| IGHV4-39*01 | 2684 | 2293 | 85.43 | 100.00 | 6.08 | 2455 | 2198 | ||||
| IGHV4-59*01 | 1756 | 1519 | 86.50 | 100.00 | 4.03 | 1700 | 1507 | ||||
| IGHV4-61*01 | 269 | 223 | 82.90 | 14.00 | 0.59 | 258 | 222 | ||||
| IGHV4-61*02 | 1640 | 1433 | 87.38 | 86.00 | 3.80 | 1569 | 1408 | ||||
| IGHV5-10-1*03 | 1285 | 1123 | 87.39 | 100.00 | 2.98 | 1207 | 1081 | ||||
| IGHV5-51*01 | 1899 | 1617 | 85.15 | 100.00 | 4.29 | 1803 | 1573 | ||||
| IGHV6-1*01 | 431 | 362 | 83.99 | 100.00 | 0.96 | 410 | 354 | ||||
| IGHV7-4-1*01 | 11 | 6 | 54.55 | 100.00 | 0.02 | 11 | 6 | ||||
| Totals | 44697 | 37715 | 84.38 |