Genotype 'A007 VL' (Submission S00028)
NCBI Information
| Sample | Title |
|---|---|
| SAMN12370139 | Homo sapiens |
| Record Set | Title |
|---|---|
| ERX3006611 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGLV10-54*01_S4180 | 11279 | IGLV10-54*01 | IGLV10-54*01 | 1 | 1 | A228C | 1 | L76F | |
| IGLV1-44*01_S0696 | 2994 | IGLV1-44*01 | IGLV1-44*01 | 1 | 1 | C146G | 1 | A49G | |
| IGLV2-14*03x | 71826 | IGLV2-14*03 | IGLV2-23*02 | 0 | 15 | 8 | X1Q,X2S,X3A,X4L,X5T,X6Q,X7P,X8A | ||
| IGLV2-14*04x | 21083 | IGLV2-14*04 | IGLV2-23*02 | 0 | 14 | 8 | X1Q,X2S,X3A,X4L,X5T,X6Q,X7P,X8A | ||
| IGLV3-21*01_S5562 | 9680 | IGLV3-21*01 | IGLV3-21*03 | 1 | 3 | C324T | 0 | ||
| IGLV3-25*02_S7225 | 16227 | IGLV3-25*03 | IGLV3-25*02 | 0 | 1 | -334A,-335C,-336T,-337T,-338A,-339T,-340C,-341C | 2 | -112T,-113Y | |
| IGLV6-57*01_S1429 | 14472 | IGLV6-57*01 | IGLV6-57*01 | 2 | 2 | C21G,T145G | 1 | S49A | |
| IGLV7-46*01_S3303 | 656 | IGLV7-46*01 | IGLV7-46*02 | 1 | 2 | A213C | 0 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGLV10-54*01 | 7826 | 2117 | 27.05 | 41.00 | 1.77 | 660 | 39 | ||||
| IGLV10-54*01_S4180 | 11279 | 2138 | 18.96 | 59.00 | 1.79 | 959 | 42 | ||||
| IGLV1-40*01 | 34784 | 10861 | 31.22 | 100.00 | 9.09 | 3912 | 404 | ||||
| IGLV1-44*01 | 34394 | 8005 | 23.27 | 92.00 | 6.70 | 3083 | 197 | ||||
| IGLV1-44*01_S0696 | 2994 | 1052 | 35.14 | 8.00 | 0.88 | 352 | 42 | ||||
| IGLV1-47*01 | 6867 | 1798 | 26.18 | 31.00 | 1.50 | 856 | 83 | ||||
| IGLV1-47*02 | 15396 | 3529 | 22.92 | 69.00 | 2.95 | 1632 | 118 | ||||
| IGLV1-51*01 | 8833 | 2472 | 27.99 | 66.00 | 2.07 | 1000 | 167 | ||||
| IGLV1-51*02 | 4643 | 1493 | 32.16 | 34.00 | 1.25 | 597 | 129 | ||||
| IGLV2-8*01 | 48325 | 7138 | 14.77 | 100.00 | 5.97 | 4468 | 198 | ||||
| IGLV2-11*01 | 29703 | 4787 | 16.12 | 100.00 | 4.00 | 2289 | 196 | ||||
| IGLV2-14*03x | 71826 | 7262 | 10.11 | 77.00 | 6.08 | 6234 | 279 | ||||
| IGLV2-14*04x | 21083 | 8224 | 39.01 | 23.00 | 6.88 | 2229 | 301 | ||||
| IGLV2-18*02 | 11751 | 1165 | 9.91 | 100.00 | 0.97 | 1085 | 44 | ||||
| IGLV2-23*01 | 11861 | 4709 | 39.70 | 28.00 | 3.94 | 979 | 153 | ||||
| IGLV2-23*02 | 31055 | 9150 | 29.46 | 72.00 | 7.66 | 2500 | 226 | ||||
| IGLV3-1*01 | 36458 | 6118 | 16.78 | 100.00 | 5.12 | 2136 | 247 | ||||
| IGLV3-9*01 | 829 | 142 | 17.13 | 100.00 | 0.12 | 140 | 39 | ||||
| IGLV3-10*01 | 3968 | 1171 | 29.51 | 100.00 | 0.98 | 341 | 52 | ||||
| IGLV3-16*01 | 1358 | 552 | 40.65 | 100.00 | 0.46 | 131 | 30 | ||||
| IGLV3-19*01 | 22249 | 10146 | 45.60 | 100.00 | 8.49 | 2217 | 364 | ||||
| IGLV3-21*03 | 17759 | 3770 | 21.23 | 65.00 | 3.15 | 1494 | 120 | ||||
| IGLV3-21*01_S5562 | 9680 | 1925 | 19.89 | 35.00 | 1.61 | 803 | 67 | ||||
| IGLV3-22*01 | 146 | 120 | 82.19 | 100.00 | 0.10 | 18 | 9 | ||||
| IGLV3-25*02 | 5866 | 3019 | 51.47 | 27.00 | 2.53 | 446 | 80 | ||||
| IGLV3-25*02_S7225 | 16227 | 5410 | 33.34 | 73.00 | 4.53 | 974 | 139 | ||||
| IGLV3-27*01 | 942 | 643 | 68.26 | 100.00 | 0.54 | 102 | 38 | ||||
| IGLV4-60*02 | 1284 | 459 | 35.75 | 40.00 | 0.38 | 181 | 35 | ||||
| IGLV4-60*03 | 1943 | 670 | 34.48 | 60.00 | 0.56 | 221 | 40 | ||||
| IGLV4-69*01 | 7293 | 2127 | 29.16 | 100.00 | 1.78 | 792 | 113 | ||||
| IGLV5-37*01 | 393 | 202 | 51.40 | 100.00 | 0.17 | 95 | 46 | ||||
| IGLV5-39*01 | 343 | 142 | 41.40 | 100.00 | 0.12 | 39 | 11 | ||||
| IGLV5-45*01 | 600 | 268 | 44.67 | 22.00 | 0.22 | 65 | 15 | ||||
| IGLV5-45*03 | 2091 | 833 | 39.84 | 78.00 | 0.70 | 182 | 28 | ||||
| IGLV5-52*01 | 373 | 152 | 40.75 | 100.00 | 0.13 | 59 | 12 | ||||
| IGLV6-57*01 | 9307 | 1423 | 15.29 | 39.00 | 1.19 | 802 | 58 | ||||
| IGLV6-57*01_S1429 | 14472 | 1776 | 12.27 | 61.00 | 1.49 | 1022 | 69 | ||||
| IGLV7-43*01 | 600 | 154 | 25.67 | 100.00 | 0.13 | 135 | 42 | ||||
| IGLV7-46*02 | 102 | 34 | 33.33 | 13.00 | 0.03 | 24 | 9 | ||||
| IGLV7-46*01_S3303 | 656 | 31 | 4.73 | 87.00 | 0.03 | 129 | 10 | ||||
| IGLV8-61*01 | 3725 | 415 | 11.14 | 93.00 | 0.35 | 390 | 20 | ||||
| IGLV8-61*02 | 265 | 175 | 66.04 | 7.00 | 0.15 | 32 | 13 | ||||
| IGLV9-49*01 | 4820 | 1750 | 36.31 | 100.00 | 1.46 | 481 | 49 | ||||
| Totals | 516369 | 119527 | 23.15 |