Genotype 'A007 VK' (Submission S00028)
NCBI Information
| Sample | Title |
|---|---|
| SAMN12370139 | Homo sapiens |
| Record Set | Title |
|---|---|
| ERX3006610 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGKV1-9*01_S3186 | 12056 | IGKV1-9*01 | IGKV1-9*01 | 13 | 13 | T25C,G83T,A106G,G110C,G129A,G153C,T165C,C167G,G206C,A284G,T306C,T307C,C330T | 9 | S9P,G28V,S36G,S37T,K51N,A56G,S69T,Q95R,Y103H | |
| IGKV3-7*04_S1697 | 1023 | IGKV3-7*04 | IGKV3D-15*01 | 31 | 44 | A4G,T5C,T6C,G7C,T8C,A10G,T11C,A13C,C14A,A15G,A17T,G18T,T19C,C20T,T21C,C22T,C23T,A24C,C26T,A28C,C29T,C30G,G33A,T34C,C35T,T36C,T38G,T40C,C41T,T42C,C90T | 12 | I2A,V3P,M4A,T5Q,Q6L,S7L,P8F,P9L,T10L,S12L,L13W,S14L | |
| IGKV1D-8*01_S8780 | 747 | IGKV1D-8*01 | IGKV1D-8*01 | 1 | 1 | C59T | 1 | T20I |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGKV1-5*03 | 53725 | 17248 | 32.10 | 100.00 | 9.12 | 3754 | 718 | ||||
| IGKV1-6*01 | 7868 | 1862 | 23.67 | 100.00 | 0.98 | 601 | 62 | ||||
| IGKV1-8*01 | 7743 | 2467 | 31.86 | 100.00 | 1.30 | 586 | 136 | ||||
| IGKV1-9*01 | 18925 | 3633 | 19.20 | 61.00 | 1.92 | 1473 | 211 | ||||
| IGKV1-9*01_S3186 | 12056 | 3156 | 26.18 | 39.00 | 1.67 | 596 | 22 | ||||
| IGKV1-12*01 | 11162 | 2467 | 22.10 | 100.00 | 1.30 | 1190 | 114 | ||||
| IGKV1-16*02 | 22472 | 2808 | 12.50 | 100.00 | 1.48 | 1697 | 197 | ||||
| IGKV1-17*01 | 13013 | 4491 | 34.51 | 100.00 | 2.37 | 1139 | 194 | ||||
| IGKV1-27*01 | 14164 | 4578 | 32.32 | 100.00 | 2.42 | 1315 | 230 | ||||
| IGKV1-33*01 | 52643 | 28859 | 54.82 | 100.00 | 15.26 | 3880 | 1129 | ||||
| IGKV1-37*01 | 4867 | 2778 | 57.08 | 100.00 | 1.47 | 593 | 170 | ||||
| IGKV1-39*01 | 101850 | 42003 | 41.24 | 100.00 | 22.21 | 7745 | 1363 | ||||
| IGKV2-18*01 | 281 | 160 | 56.94 | 100.00 | 0.08 | 37 | 14 | ||||
| IGKV2-24*01 | 11225 | 1359 | 12.11 | 100.00 | 0.72 | 1376 | 117 | ||||
| IGKV2-28*01 | 30746 | 8103 | 26.35 | 100.00 | 4.28 | 3751 | 423 | ||||
| IGKV2-30*01 | 22561 | 3298 | 14.62 | 100.00 | 1.74 | 2645 | 247 | ||||
| IGKV2-40*01 | 4203 | 1581 | 37.62 | 100.00 | 0.84 | 445 | 81 | ||||
| IGKV3-7*04_S1697 | 1023 | 23 | 2.25 | 100.00 | 0.01 | 149 | 9 | ||||
| IGKV3-11*01 | 46227 | 15967 | 34.54 | 100.00 | 8.44 | 5602 | 1053 | ||||
| IGKV3-15*01 | 41844 | 12508 | 29.89 | 100.00 | 6.61 | 4526 | 697 | ||||
| IGKV3-20*01 | 81204 | 19215 | 23.66 | 100.00 | 10.16 | 9237 | 1317 | ||||
| IGKV4-1*01 | 6276 | 1463 | 23.31 | 100.00 | 0.77 | 1562 | 304 | ||||
| IGKV5-2*01 | 1185 | 317 | 26.75 | 100.00 | 0.17 | 238 | 83 | ||||
| IGKV6-21*01 | 454 | 125 | 27.53 | 100.00 | 0.07 | 81 | 29 | ||||
| IGKV1D-8*01 | 976 | 758 | 77.66 | 57.00 | 0.40 | 110 | 50 | ||||
| IGKV1D-8*01_S8780 | 747 | 538 | 72.02 | 43.00 | 0.28 | 82 | 42 | ||||
| IGKV3D-11*01 | 562 | 224 | 39.86 | 100.00 | 0.12 | 111 | 41 | ||||
| IGKV1D-12*01 | 4497 | 1566 | 34.82 | 100.00 | 0.83 | 422 | 76 | ||||
| IGKV1D-13*01 | 1014 | 501 | 49.41 | 100.00 | 0.26 | 115 | 40 | ||||
| IGKV3D-15*01 | 1684 | 375 | 22.27 | 100.00 | 0.20 | 289 | 47 | ||||
| IGKV1D-16*01 | 1681 | 538 | 32.00 | 100.00 | 0.28 | 241 | 49 | ||||
| IGKV1D-17*01 | 56 | 48 | 85.71 | 100.00 | 0.03 | 9 | 5 | ||||
| IGKV3D-20*01 | 998 | 319 | 31.96 | 100.00 | 0.17 | 203 | 50 | ||||
| IGKV6D-21*02 | 84 | 26 | 30.95 | 100.00 | 0.01 | 23 | 6 | ||||
| IGKV2D-24*01 | 267 | 142 | 53.18 | 100.00 | 0.08 | 46 | 17 | ||||
| IGKV2D-26*03 | 407 | 178 | 43.73 | 100.00 | 0.09 | 60 | 16 | ||||
| IGKV2D-29*01 | 10964 | 2392 | 21.82 | 100.00 | 1.26 | 1217 | 139 | ||||
| IGKV2D-30*01 | 727 | 296 | 40.72 | 100.00 | 0.16 | 137 | 28 | ||||
| IGKV1D-43*01 | 1149 | 738 | 64.23 | 100.00 | 0.39 | 173 | 58 | ||||
| Totals | 593530 | 189108 | 31.86 |