Genotype 'A007 VK' (Submission S00028)


Genotype Name	A007 VK
Subject ID	A007
Locus	IGK
Sequence Type	V
Genotype Filename	VK_reanalysis_Nestor_ogrdb_report.csv
Tool/Settings	IgDiscover

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMN12370139	Homo sapiens

Record Set	Title
ERX3006610	Illumina MiSeq paired end sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
IGKV1-901_S3186*	12056	IGKV1-9*01	IGKV1-9*01	13	13	T25C,G83T,A106G,G110C,G129A,G153C,T165C,C167G,G206C,A284G,T306C,T307C,C330T	9	S9P,G28V,S36G,S37T,K51N,A56G,S69T,Q95R,Y103H
IGKV3-704_S1697*	1023	IGKV3-7*04	IGKV3D-15*01	31	44	A4G,T5C,T6C,G7C,T8C,A10G,T11C,A13C,C14A,A15G,A17T,G18T,T19C,C20T,T21C,C22T,C23T,A24C,C26T,A28C,C29T,C30G,G33A,T34C,C35T,T36C,T38G,T40C,C41T,T42C,C90T	12	I2A,V3P,M4A,T5Q,Q6L,S7L,P8F,P9L,T10L,S12L,L13W,S14L
IGKV1D-801_S8780*	747	IGKV1D-8*01	IGKV1D-8*01	1	1	C59T	1	T20I

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated
IGKV1-5*03	53725	17248	32.10	100.00	9.12	3754	718
IGKV1-6*01	7868	1862	23.67	100.00	0.98	601	62
IGKV1-8*01	7743	2467	31.86	100.00	1.30	586	136
IGKV1-9*01	18925	3633	19.20	61.00	1.92	1473	211
IGKV1-901_S3186*	12056	3156	26.18	39.00	1.67	596	22
IGKV1-12*01	11162	2467	22.10	100.00	1.30	1190	114
IGKV1-16*02	22472	2808	12.50	100.00	1.48	1697	197
IGKV1-17*01	13013	4491	34.51	100.00	2.37	1139	194
IGKV1-27*01	14164	4578	32.32	100.00	2.42	1315	230
IGKV1-33*01	52643	28859	54.82	100.00	15.26	3880	1129
IGKV1-37*01	4867	2778	57.08	100.00	1.47	593	170
IGKV1-39*01	101850	42003	41.24	100.00	22.21	7745	1363
IGKV2-18*01	281	160	56.94	100.00	0.08	37	14
IGKV2-24*01	11225	1359	12.11	100.00	0.72	1376	117
IGKV2-28*01	30746	8103	26.35	100.00	4.28	3751	423
IGKV2-30*01	22561	3298	14.62	100.00	1.74	2645	247
IGKV2-40*01	4203	1581	37.62	100.00	0.84	445	81
IGKV3-704_S1697*	1023	23	2.25	100.00	0.01	149	9
IGKV3-11*01	46227	15967	34.54	100.00	8.44	5602	1053
IGKV3-15*01	41844	12508	29.89	100.00	6.61	4526	697
IGKV3-20*01	81204	19215	23.66	100.00	10.16	9237	1317
IGKV4-1*01	6276	1463	23.31	100.00	0.77	1562	304
IGKV5-2*01	1185	317	26.75	100.00	0.17	238	83
IGKV6-21*01	454	125	27.53	100.00	0.07	81	29
IGKV1D-8*01	976	758	77.66	57.00	0.40	110	50
IGKV1D-801_S8780*	747	538	72.02	43.00	0.28	82	42
IGKV3D-11*01	562	224	39.86	100.00	0.12	111	41
IGKV1D-12*01	4497	1566	34.82	100.00	0.83	422	76
IGKV1D-13*01	1014	501	49.41	100.00	0.26	115	40
IGKV3D-15*01	1684	375	22.27	100.00	0.20	289	47
IGKV1D-16*01	1681	538	32.00	100.00	0.28	241	49
IGKV1D-17*01	56	48	85.71	100.00	0.03	9	5
IGKV3D-20*01	998	319	31.96	100.00	0.17	203	50
IGKV6D-21*02	84	26	30.95	100.00	0.01	23	6
IGKV2D-24*01	267	142	53.18	100.00	0.08	46	17
IGKV2D-26*03	407	178	43.73	100.00	0.09	60	16
IGKV2D-29*01	10964	2392	21.82	100.00	1.26	1217	139
IGKV2D-30*01	727	296	40.72	100.00	0.16	137	28
IGKV1D-43*01	1149	738	64.23	100.00	0.39	173	58
Totals	593530	189108	31.86