Genotype 'A007 VH' (Submission S00028)
NCBI Information
| Sample | Title |
|---|---|
| SAMEA5178755 | A007 |
| Record Set | Title |
|---|---|
| ERX3006608 | Illumina MiSeq paired end sequencing |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-69*08_S0647 | 11159 | IGHV1-69*02 | IGHV1-69*02 | 0 | 0 | -319G,-320A | 0 | ||
| IGHV3-7*02_A318G | 12640 | IGHV3-7*02 | IGHV3-7*03 | 1 | 3 | A318G,-319G,-320A | 0 | ||
| IGHV3-20*01_S2478 | 7509 | IGHV3-20*04 | IGHV3-43*02 | 0 | 24 | 0 | |||
| IGHV3-21*01_S5868 | 9370 | IGHV3-21*01 | IGHV3-21*01 | 2 | 2 | C159T,C164A | 1 | S55Y | |
| IGHV3-53*02_S0744 | 5425 | IGHV3-53*02 | IGHV3-53*04 | 1 | 3 | C288T | 0 | ||
| IGHV4-59*08 | 9349 | ||||||||
| IGHV5-51*01_S7082 | 2219 | IGHV5-51*03 | IGHV5-51*01 | 0 | 1 | -319C,-320A | 0 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*04 | 8205 | 5724 | 69.76 | 100.00 | 1.65 | 1638 | 717 | IGHJ6 | 70:30 | ||
| IGHV1-3*01 | 12461 | 6859 | 55.04 | 100.00 | 1.98 | 2156 | 686 | IGHJ6 | 70:30 | ||
| IGHV1-8*01 | 77 | 15 | 19.48 | 100.00 | 0.00 | 77 | 15 | IGHJ6 | 94:6 | ||
| IGHV1-18*01 | 61871 | 41594 | 67.23 | 100.00 | 11.99 | 11573 | 5158 | IGHJ6 | 73:27 | ||
| IGHV1-24*01 | 2637 | 1991 | 75.50 | 100.00 | 0.57 | 594 | 311 | IGHJ6 | 72:28 | ||
| IGHV1-46*01 | 4843 | 2580 | 53.27 | 55.00 | 0.74 | 898 | 427 | IGHJ6 | 16:84 | ||
| IGHV1-46*03 | 3978 | 2688 | 67.57 | 45.00 | 0.77 | 749 | 427 | IGHJ6 | 100:0 | ||
| IGHV1-58*02 | 979 | 680 | 69.46 | 100.00 | 0.20 | 231 | 103 | IGHJ6 | 75:25 | ||
| IGHV1-69*02 | 5590 | 4126 | 73.81 | 33.00 | 1.19 | 1121 | 526 | IGHJ6 | 70:30 | ||
| IGHV1-69*08_S0647 | 11159 | 8072 | 72.34 | 67.00 | 2.33 | 2186 | 1082 | IGHJ6 | 73:27 | ||
| IGHV2-5*02 | 8100 | 3894 | 48.07 | 100.00 | 1.12 | 1475 | 555 | IGHJ6 | 77:23 | ||
| IGHV2-26*01 | 1871 | 1278 | 68.31 | 100.00 | 0.37 | 332 | 150 | IGHJ6 | 61:39 | ||
| IGHV2-70*15 | 3413 | 1907 | 55.87 | 100.00 | 0.55 | 611 | 232 | IGHJ6 | 61:39 | ||
| IGHV3-7*03 | 21677 | 4120 | 19.01 | 63.00 | 1.19 | 2773 | 487 | IGHJ6 | 1:99 | ||
| IGHV3-7*02_A318G | 12640 | 2796 | 22.12 | 37.00 | 0.81 | 1433 | 269 | IGHJ6 | 100:0 | ||
| IGHV3-11*05 | 17872 | 9419 | 52.70 | 70.00 | 2.71 | 2525 | 891 | IGHJ6 | 99:1 | ||
| IGHV3-11*06 | 7680 | 4090 | 53.26 | 30.00 | 1.18 | 1111 | 381 | IGHJ6 | 1:99 | ||
| IGHV3-13*04 | 3435 | 2063 | 60.06 | 84.00 | 0.59 | 526 | 207 | IGHJ6 | 100:0 | ||
| IGHV3-13*05 | 666 | 472 | 70.87 | 16.00 | 0.14 | 92 | 38 | IGHJ6 | 1:99 | ||
| IGHV3-15*01 | 40033 | 17276 | 43.15 | 100.00 | 4.98 | 5505 | 1695 | IGHJ6 | 59:41 | ||
| IGHV3-20*01_S2478 | 7509 | 5129 | 68.30 | 100.00 | 1.48 | 1232 | 468 | IGHJ6 | 97:3 | ||
| IGHV3-21*01 | 13799 | 8576 | 62.15 | 60.00 | 2.47 | 2524 | 1066 | IGHJ6 | 99:1 | ||
| IGHV3-21*01_S5868 | 9370 | 5226 | 55.77 | 40.00 | 1.51 | 1554 | 628 | IGHJ6 | 1:99 | ||
| IGHV3-23*01 | 48765 | 24623 | 50.49 | 68.00 | 7.10 | 8020 | 2837 | IGHJ6 | 99:1 | ||
| IGHV3-23*04 | 22704 | 9626 | 42.40 | 32.00 | 2.77 | 3914 | 1122 | IGHJ6 | 3:97 | ||
| IGHV3-30-3*01 | 174 | 18 | 10.34 | 100.00 | 0.01 | 77 | 18 | IGHJ6 | 58:42 | ||
| IGHV3-30*01 | 29600 | 18672 | 63.08 | 48.00 | 5.38 | 4934 | 1898 | IGHJ6 | 3:97 | ||
| IGHV3-30*18 | 31498 | 19293 | 61.25 | 52.00 | 5.56 | 5140 | 1985 | IGHJ6 | 98:2 | ||
| IGHV3-33*01 | 68835 | 37173 | 54.00 | 100.00 | 10.71 | 10586 | 3774 | IGHJ6 | 68:32 | ||
| IGHV3-43*02 | 6889 | 2796 | 40.59 | 100.00 | 0.81 | 1092 | 360 | IGHJ6 | 2:98 | ||
| IGHV3-48*01 | 14193 | 4744 | 33.42 | 50.00 | 1.37 | 2233 | 646 | IGHJ6 | 100:0 | ||
| IGHV3-48*03 | 14311 | 7127 | 49.80 | 50.00 | 2.05 | 2369 | 926 | IGHJ6 | 2:98 | ||
| IGHV3-49*03 | 3949 | 2248 | 56.93 | 53.00 | 0.65 | 745 | 326 | IGHJ6 | 93:7 | ||
| IGHV3-49*04 | 3562 | 1721 | 48.32 | 47.00 | 0.50 | 708 | 280 | IGHJ6 | 1:99 | ||
| IGHV3-53*04 | 3551 | 2163 | 60.91 | 40.00 | 0.62 | 573 | 235 | IGHJ6 | 99:1 | ||
| IGHV3-53*02_S0744 | 5425 | 2447 | 45.11 | 60.00 | 0.71 | 901 | 300 | IGHJ6 | 1:99 | ||
| IGHV3-64*01 | 7763 | 2240 | 28.85 | 100.00 | 0.65 | 1013 | 284 | IGHJ6 | 81:19 | ||
| IGHV3-66*01 | 28158 | 12169 | 43.22 | 100.00 | 3.51 | 3754 | 1156 | IGHJ6 | 63:37 | ||
| IGHV3-72*01 | 4638 | 424 | 9.14 | 100.00 | 0.12 | 541 | 53 | IGHJ6 | 79:21 | ||
| IGHV3-73*01 | 10183 | 1599 | 15.70 | 100.00 | 0.46 | 1092 | 150 | IGHJ6 | 96:4 | ||
| IGHV3-74*01 | 22479 | 5064 | 22.53 | 100.00 | 1.46 | 2907 | 467 | IGHJ6 | 55:45 | ||
| IGHV3-64D*06 | 2085 | 840 | 40.29 | 100.00 | 0.24 | 356 | 150 | IGHJ6 | 78:22 | ||
| IGHV4-4*02 | 5064 | 2345 | 46.31 | 100.00 | 0.68 | 924 | 439 | IGHJ6 | 73:27 | ||
| IGHV4-31*03 | 15344 | 10058 | 65.55 | 100.00 | 2.90 | 3081 | 1589 | IGHJ6 | 64:36 | ||
| IGHV4-34*01 | 11386 | 7751 | 68.07 | 100.00 | 2.23 | 2438 | 1466 | IGHJ6 | 56:44 | ||
| IGHV4-39*01 | 36179 | 14059 | 38.86 | 100.00 | 4.05 | 5845 | 2080 | IGHJ6 | 53:47 | ||
| IGHV4-59*01 | 9281 | 4997 | 53.84 | 50.00 | 1.44 | 2333 | 1235 | IGHJ6 | 44:56 | ||
| IGHV4-59*08 | 9349 | 4512 | 48.26 | 50.00 | 1.30 | 2224 | 1136 | IGHJ6 | 50:50 | ||
| IGHV5-10-1*01 | 1143 | 808 | 70.69 | 42.00 | 0.23 | 307 | 219 | IGHJ6 | 100:0 | ||
| IGHV5-10-1*03 | 1584 | 929 | 58.65 | 58.00 | 0.27 | 386 | 262 | IGHJ6 | 0:100 | ||
| IGHV5-51*01 | 2046 | 1261 | 61.63 | 48.00 | 0.36 | 580 | 349 | IGHJ6 | 1:99 | ||
| IGHV5-51*01_S7082 | 2219 | 1282 | 57.77 | 52.00 | 0.37 | 625 | 374 | IGHJ6 | 97:3 | ||
| IGHV6-1*01 | 8561 | 3176 | 37.10 | 100.00 | 0.92 | 1343 | 414 | IGHJ6 | 59:41 | ||
| IGHV7-4-1*01 | 409 | 260 | 63.57 | 100.00 | 0.07 | 83 | 30 | IGHJ6 | 98:2 | ||
| Totals | 691192 | 347000 | 50.2 | 1691:-1591 |