Genotype NameGenotype - with Database 3
Subject IDIB
LocusIGH
Sequence TypeV
Genotype Filenamegenotype_database_3.csv
Tool/SettingsIgDiscover with Database 3
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SampleTitle
SAMN05924296IB_after_1d
SAMN05924297IB_after_1h
SAMN05924298IB_after_1w
SAMN05924299IB_after_2w
SAMN05924300IB_after_3d
SAMN05924301IB_after_3w
SAMN05924302IB_after_4w
SAMN05924303IB_before_1h
SAMN05924304IB_before_2d
SAMN05924305IB_before_8d
Record SetTitle
SRR4431767IB_after_1d
SRR4431766IB_after_1h
SRR4431765IB_after_1w
SRR4431764IB_after_2w
SRR4431771IB_after_3d
SRR4431770IB_after_3w
SRR4431769IB_after_4w
SRR4431768IB_before_1h
SRR4431773IB_before_2d
SRR4431772IB_before_8d

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name
Sequences
Closest Reference
Closest in Host
NT Diffs (reference)
NT Diffs (host)
NT Substs (reference)
AA Diffs (reference)
AA Substs (reference)
Sequence
IGHV3-43D*01_S3103211IGHV3-43D*01IGHV3-43*011C195A0
IGHV3-7*02_A318G1847IGHV3-7*02IGHV3-7*011A318G0

Genotype

Allele name
Sequences
Unmutated Seqs
Unmutated % within allele
Unmutated UMIs
Allelic %
Total unmutated population (%)
Unique CDR3s
Unique CDR3s with unmutated
Haplotyping Gene
Haplotyping Ratio
Sequence
IGHV1-18*016893308244.71100.003.002656Haplotyping not possible
IGHV1-2*028218309837.7080.003.022664Haplotyping not possible
IGHV1-2*04195977239.4120.000.75675Haplotyping not possible
IGHV1-24*012548109542.97100.001.07944Haplotyping not possible
IGHV1-3*01214793643.60100.000.91812Haplotyping not possible
IGHV1-45*0222940.91100.000.018Haplotyping not possible
IGHV1-46*014270175441.08100.001.711548Haplotyping not possible
IGHV1-58*0266627140.69100.000.26237Haplotyping not possible
IGHV1-69*019476404542.6948.003.943558Haplotyping not possible
IGHV1-69*023896163541.9720.001.591428Haplotyping not possible
IGHV1-69*066408269242.0132.002.622376Haplotyping not possible
IGHV1-69-2*0146521947.10100.000.21193Haplotyping not possible
IGHV1-8*015184213241.13100.002.081875Haplotyping not possible
IGHV2-26*013183163151.24100.001.591369Haplotyping not possible
IGHV2-5*012570119946.6545.001.171008Haplotyping not possible
IGHV2-5*023252149445.9455.001.461245Haplotyping not possible
IGHV2-70*0137617947.61100.000.17158Haplotyping not possible
IGHV2-70D*0426411643.94100.000.1196Haplotyping not possible
IGHV3-11*01271885731.5351.000.83772Haplotyping not possible
IGHV3-11*05251483133.0549.000.81763Haplotyping not possible
IGHV3-13*0187929433.4543.000.29265Haplotyping not possible
IGHV3-13*04112438734.4357.000.38339Haplotyping not possible
IGHV3-15*017714279236.19100.002.722439Haplotyping not possible
IGHV3-20*0176120727.20100.000.20188Haplotyping not possible
IGHV3-21*0113697512937.45100.005.004493Haplotyping not possible
IGHV3-23*01390061237831.73100.0012.0610831Haplotyping not possible
IGHV3-30*189552308932.34100.003.012802Haplotyping not possible
IGHV3-33*0115659492931.48100.004.804530Haplotyping not possible
IGHV3-43*0139314837.66100.000.14138Haplotyping not possible
IGHV3-43D*01_S31032117234.12100.000.0766Haplotyping not possible
IGHV3-48*024692137329.2636.001.341239Haplotyping not possible
IGHV3-48*037506248333.0864.002.422154Haplotyping not possible
IGHV3-49*03165163038.1650.000.61564Haplotyping not possible
IGHV3-49*04176562835.5850.000.61520Haplotyping not possible
IGHV3-53*02143550335.0547.000.49453Haplotyping not possible
IGHV3-53*04141156740.1853.000.55497Haplotyping not possible
IGHV3-64*01110240036.30100.000.39358Haplotyping not possible
IGHV3-64D*06153554035.18100.000.53469Haplotyping not possible
IGHV3-66*02245092437.71100.000.90809Haplotyping not possible
IGHV3-7*014081125930.8572.001.231100Haplotyping not possible
IGHV3-7*02_A318G184749526.8028.000.48434Haplotyping not possible
IGHV3-72*0166817325.90100.000.17146Haplotyping not possible
IGHV3-73*0182824129.1149.000.23220Haplotyping not possible
IGHV3-73*02104625124.0051.000.24231Haplotyping not possible
IGHV3-74*015787121420.98100.001.181023Haplotyping not possible
IGHV3-9*016033229438.02100.002.232002Haplotyping not possible
IGHV4-28*01241354.17100.000.0110Haplotyping not possible
IGHV4-31*037426291939.31100.002.842536Haplotyping not possible
IGHV4-34*0122622960942.48100.009.368450Haplotyping not possible
IGHV4-38-2*014222172140.76100.001.681475Haplotyping not possible
IGHV4-39*0112319484039.29100.004.714151Haplotyping not possible
IGHV4-4*02229685637.2845.000.83774Haplotyping not possible
IGHV4-4*072833105837.3555.001.03909Haplotyping not possible
IGHV4-59*018247314638.1570.003.062750Haplotyping not possible
IGHV4-59*083595134737.4730.001.311181Haplotyping not possible
IGHV4-61*027634292338.29100.002.852525Haplotyping not possible
IGHV5-10-1*01166960536.25100.000.59542Haplotyping not possible
IGHV5-51*01320686526.9859.000.84777Haplotyping not possible
IGHV5-51*03184360732.9441.000.59540Haplotyping not possible
IGHV6-1*01213569632.60100.000.68625Haplotyping not possible
IGHV7-4-1*01491734.69100.000.0217Haplotyping not possible
Totals27998210266936.67