Genotype NameLP23810
Subject IDLP23810
LocusIGH
Sequence TypeV
Genotype Filename23810_genotype.csv
Tool/Settingspartis
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SampleTitle
SAMN06821265LP23810-IgM-RACE1
SAMN06821266LP23810-IgM-RACE2
Record SetTitle
SRR5471273IGH variable regions sequenced from peripheral B cells of normal donor LP23810 using an IgM constant region primer and 5’ RACE
SRR5471272IGH variable regions sequenced from peripheral B cells of normal donor LP23810 using an IgM constant region primer and 5’ RACE

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name
Sequences
Closest Reference
Closest in Host
NT Diffs (reference)
NT Diffs (host)
NT Substs (reference)
AA Diffs (reference)
AA Substs (reference)
Sequence
IGHV1-58*01+G29A178IGHV1-58*01IGHV1-58*011G30A0
IGHV3-21*01+T52C9IGHV3-21*01IGHV3-21*011T56C1L19P
IGHV3-43*01+A96G.C197T.A261G146IGHV3-43*01IGHV3-9*013A112G,C219T,A286G2T38A,T96A
IGHV3-64*05+A188C.G240C281IGHV3-64*05IGHV3-23*042A207C,G265C1V89L
IGHV4-38-2*02+G76A.T136G.G169C1912IGHV4-38-2*02IGHV4-38-2*013G80A,T149G,G191C3G27D,L50R,S64T

Genotype

Allele name
Sequences
Unmutated Seqs
Unmutated % within allele
Unmutated UMIs
Allelic %
Total unmutated population (%)
Unique CDR3s
Unique CDR3s with unmutated
Haplotyping Gene
Haplotyping Ratio
Sequence
IGHV1-18*011946131467.52100.002.00952Haplotyping not possible
IGHV1-2*029951594959.78100.009.005049Haplotyping not possible
IGHV1-24*015034394278.31100.006.002261Haplotyping not possible
IGHV1-46*01100757256.80100.000.00477Haplotyping not possible
IGHV1-58*0121416074.7755.000.00100Haplotyping not possible
IGHV1-58*01+G29A17812771.3544.000.0083Haplotyping not possible
IGHV1-69*0110270758673.87100.0012.004996Haplotyping not possible
IGHV1-8*01182994251.50100.001.00781Haplotyping not possible
IGHV2-26*0124815361.69100.000.00167Haplotyping not possible
IGHV2-5*0295646348.43100.000.00599Haplotyping not possible
IGHV2-70*011328665.15100.000.0093Haplotyping not possible
IGHV3-11*0123914259.4170.000.00134Haplotyping not possible
IGHV3-11*06985960.2029.000.0057Haplotyping not possible
IGHV3-13*0129812341.28100.000.00150Haplotyping not possible
IGHV3-15*01128665350.78100.001.00781Haplotyping not possible
IGHV3-20*011166354.31100.000.0073Haplotyping not possible
IGHV3-21*014069244260.01100.003.002070Haplotyping not possible
IGHV3-21*01+T52C900.000.000.007Haplotyping not possible
IGHV3-23*018499320337.6983.005.004662Haplotyping not possible
IGHV3-23*04124761649.4016.000.00823Haplotyping not possible
IGHV3-30*012039848.2822.000.00131Haplotyping not possible
IGHV3-30*0348103387.0377.000.002626Haplotyping not possible
IGHV3-33*013650198354.33100.003.001839Haplotyping not possible
IGHV3-43*01+A96G.C197T.A261G14610068.49100.000.0079Haplotyping not possible
IGHV3-48*034168210350.46100.003.002105Haplotyping not possible
IGHV3-49*0471240156.32100.000.00403Haplotyping not possible
IGHV3-53*013124132142.2978.002.001733Haplotyping not possible
IGHV3-53*0263437258.6821.000.00402Haplotyping not possible
IGHV3-64*05+A188C.G240C28111039.15100.000.00147Haplotyping not possible
IGHV3-7*014336119627.58100.001.001745Haplotyping not possible
IGHV3-72*012803713.21100.000.00122Haplotyping not possible
IGHV3-73*0236715742.78100.000.00208Haplotyping not possible
IGHV3-74*01207661029.38100.000.00840Haplotyping not possible
IGHV3-9*01120277464.39100.001.00597Haplotyping not possible
IGHV4-31*011889651.0612.000.0094Haplotyping not possible
IGHV4-31*03121069557.4487.001.00592Haplotyping not possible
IGHV4-34*01223771299858.09100.0021.0013572Haplotyping not possible
IGHV4-38-2*019520487051.16100.007.005216Haplotyping not possible
IGHV4-38-2*02+G76A.T136G.G169C191200.000.000.001601Haplotyping not possible
IGHV4-4*073243152246.93100.002.001726Haplotyping not possible
IGHV4-59*012122103348.68100.001.001167Haplotyping not possible
IGHV4-61*0186636742.38100.000.00450Haplotyping not possible
IGHV5-10-1*0343528064.37100.000.00189Haplotyping not possible
IGHV5-51*012180127458.44100.002.00861Haplotyping not possible
IGHV6-1*01129939530.41100.000.00537Haplotyping not possible
Totals1189676172551.88