Genotype 'B16' (Submission S00006)
NCBI Information
| Sample | Title |
|---|---|
| SAMN06675657 | B16 |
| Record Set | Title |
|---|---|
| SRR5408024 | Other Sequencing of human |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-3*01_S1455 | 8104 | IGHV1-3*01_S1455 | IGHV1-3*01 | 2 | |||||
| IGHV1-58*02_S8523 | 184 | IGHV1-58*02_S8523 | IGHV1-58*02 | 2 | |||||
| IGHV1-69*01_S5096 | 42212 | IGHV1-69*01_S5096 | IGHV1-69*01 | 2 | |||||
| IGHV2-70*01_S0584 | 1338 | IGHV2-70*01_S0584 | IGHV2-70*01 | 1 | |||||
| IGHV2-70D*04_S2803 | 522 | IGHV2-70D*04_S2803 | IGHV2-70D*0new | 2 | |||||
| IGHV3-20*01_S7413 | 3963 | IGHV3-20*01_S7413 | IGHV3-20*01 | 2 | |||||
| IGHV3-43D*01_S3740 | 728 | IGHV3-43D*01_S3740 | IGHV3-43D*01 | 3 | |||||
| IGHV3-9*01_S2103 | 9564 | IGHV3-9*01_S2103 | IGHV3-9*01 | 4 | |||||
| IGHV4-28*01_S5219 | 106 | IGHV4-28*01_S5219 | IGHV4-28*01 | 3 | |||||
| IGHV4-30-4*01_S4754 | 9608 | IGHV4-30-4*01_S4754 | IGHV4-30-4*01 | 1 | |||||
| IGHV4-4*01_S5769 | 4684 | IGHV4-4*01_S5769 | IGHV4-4*01 | 2 | |||||
| IGHV4-4*08_S4567 | 11431 | IGHV4-4*08_S4567 | IGHV4-4*08 | 4 | |||||
| IGHV4-59*01_S5140 | 17231 | IGHV4-59*01_S5140 | IGHV4-59*01 | 2 | |||||
| IGHV4-61*01_S0787 | 11036 | IGHV4-61*01_S0787 | IGHV4-61*01 | 3 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-18*01 | 27992 | 12854 | 45.92 | 10317 | 4.47 | 2912 | |||||
| IGHV1-2*02 | 18738 | 7807 | 41.66 | 6538 | 2.72 | 2030 | |||||
| IGHV1-2*04 | 3021 | 1357 | 44.92 | 1218 | 0.47 | 437 | |||||
| IGHV1-24*01 | 7395 | 3262 | 44.11 | 2711 | 1.14 | 873 | |||||
| IGHV1-3*01 | 6026 | 2554 | 42.38 | 2201 | 0.89 | 694 | |||||
| IGHV1-3*01_S1455 | 8104 | 3359 | 41.45 | 2877 | 1.17 | 890 | |||||
| IGHV1-45*02 | 99 | 60 | 60.61 | 54 | 0.02 | 23 | |||||
| IGHV1-46*01 | 14943 | 6840 | 45.77 | 5594 | 2.38 | 1906 | |||||
| IGHV1-58*02 | 965 | 379 | 39.27 | 322 | 0.13 | 110 | |||||
| IGHV1-58*02_S8523 | 184 | 71 | 38.59 | 62 | 0.02 | 22 | |||||
| IGHV1-69*01_S5096 | 42212 | 22883 | 54.21 | 17494 | 7.96 | 4772 | |||||
| IGHV1-69*02 | 10483 | 5343 | 50.97 | 4482 | 1.86 | 1431 | |||||
| IGHV1-69*11 | 22892 | 12205 | 53.32 | 9744 | 4.25 | 3095 | |||||
| IGHV1-69*12 | 26498 | 15593 | 58.85 | 12205 | 5.43 | 3692 | |||||
| IGHV1-69-2*01 | 7824 | 3384 | 43.25 | 2732 | 1.18 | 990 | |||||
| IGHV1-8*01 | 4179 | 2111 | 50.51 | 1791 | 0.73 | 658 | |||||
| IGHV1-8*02 | 6439 | 2501 | 38.84 | 2149 | 0.87 | 856 | |||||
| IGHV2-26*01 | 2457 | 1291 | 52.54 | 1046 | 0.45 | 357 | |||||
| IGHV2-5*01 | 2966 | 1713 | 57.75 | 1322 | 0.60 | 466 | |||||
| IGHV2-5*02 | 4576 | 2588 | 56.56 | 1965 | 0.90 | 619 | |||||
| IGHV2-70*01_S0584 | 1338 | 625 | 46.71 | 527 | 0.22 | 189 | |||||
| IGHV2-70D*04_S2803 | 522 | 264 | 50.57 | 225 | 0.09 | 87 | |||||
| IGHV3-11*01 | 5070 | 2487 | 49.05 | 2233 | 0.87 | 664 | |||||
| IGHV3-11*04 | 6101 | 2532 | 41.50 | 2226 | 0.88 | 802 | |||||
| IGHV3-13*01 | 1774 | 700 | 39.46 | 620 | 0.24 | 224 | |||||
| IGHV3-15*01 | 9502 | 4568 | 48.07 | 3871 | 1.59 | 1145 | |||||
| IGHV3-20*01_S7413 | 3963 | 1369 | 34.54 | 1248 | 0.48 | 374 | |||||
| IGHV3-21*01 | 23043 | 10751 | 46.66 | 9061 | 3.74 | 2670 | |||||
| IGHV3-23*01 | 34647 | 15126 | 43.66 | 12447 | 5.26 | 3029 | |||||
| IGHV3-30*01 | 14221 | 6593 | 46.36 | 5572 | 2.29 | 2067 | |||||
| IGHV3-30*02 | 12803 | 6002 | 46.88 | 5152 | 2.09 | 1639 | |||||
| IGHV3-30-3*01 | 12778 | 6131 | 47.98 | 5198 | 2.13 | 1782 | |||||
| IGHV3-33*01 | 2363 | 587 | 24.84 | 557 | 0.20 | 390 | |||||
| IGHV3-33*06 | 6500 | 3424 | 52.68 | 3168 | 1.19 | 739 | |||||
| IGHV3-43*01 | 1225 | 548 | 44.73 | 496 | 0.19 | 132 | |||||
| IGHV3-43D*01_S3740 | 728 | 302 | 41.48 | 282 | 0.11 | 71 | |||||
| IGHV3-48*01 | 5535 | 2483 | 44.86 | 2209 | 0.86 | 712 | |||||
| IGHV3-48*04 | 9637 | 3897 | 40.44 | 3449 | 1.36 | 1165 | |||||
| IGHV3-49*03 | 1243 | 658 | 52.94 | 571 | 0.23 | 225 | |||||
| IGHV3-49*04 | 1277 | 587 | 45.97 | 514 | 0.20 | 216 | |||||
| IGHV3-53*01 | 3745 | 1508 | 40.27 | 1372 | 0.52 | 378 | |||||
| IGHV3-53*04 | 2658 | 1258 | 47.33 | 1140 | 0.44 | 290 | |||||
| IGHV3-64*01 | 1607 | 761 | 47.36 | 694 | 0.26 | 243 | |||||
| IGHV3-66*02 | 4814 | 2050 | 42.58 | 1862 | 0.71 | 512 | |||||
| IGHV3-7*01 | 4964 | 2396 | 48.27 | 2125 | 0.83 | 837 | |||||
| IGHV3-7*03 | 5375 | 2399 | 44.63 | 2155 | 0.83 | 728 | |||||
| IGHV3-72*01 | 523 | 165 | 31.55 | 153 | 0.06 | 64 | |||||
| IGHV3-73*01 | 2511 | 1193 | 47.51 | 1060 | 0.42 | 315 | |||||
| IGHV3-74*01 | 3943 | 1601 | 40.60 | 1420 | 0.56 | 554 | |||||
| IGHV3-9*01 | 8891 | 3749 | 42.17 | 3186 | 1.30 | 918 | |||||
| IGHV3-9*01_S2103 | 9564 | 4206 | 43.98 | 3621 | 1.46 | 1053 | |||||
| IGHV4-28*01_S5219 | 106 | 43 | 40.57 | 36 | 0.01 | 13 | |||||
| IGHV4-30-4*01_S4754 | 9608 | 3762 | 39.15 | 3294 | 1.31 | 859 | |||||
| IGHV4-31*01 | 3021 | 1251 | 41.41 | 1106 | 0.44 | 303 | |||||
| IGHV4-34*01 | 42890 | 20718 | 48.30 | 15590 | 7.21 | 3951 | |||||
| IGHV4-38-2*01 | 15189 | 6182 | 40.70 | 5255 | 2.15 | 1610 | |||||
| IGHV4-39*07 | 18293 | 6990 | 38.21 | 5992 | 2.43 | 1865 | |||||
| IGHV4-4*01_S5769 | 4684 | 1728 | 36.89 | 1524 | 0.60 | 535 | |||||
| IGHV4-4*08_S4567 | 11431 | 5073 | 44.38 | 4456 | 1.77 | 1259 | |||||
| IGHV4-59*01 | 18123 | 8369 | 46.18 | 6881 | 2.91 | 2171 | |||||
| IGHV4-59*01_S5140 | 17231 | 8686 | 50.41 | 7033 | 3.02 | 2087 | |||||
| IGHV4-61*01_S0787 | 11036 | 4820 | 43.68 | 3942 | 1.68 | 1553 | |||||
| IGHV5-51*01 | 24343 | 13519 | 55.54 | 8526 | 4.70 | 1833 | |||||
| IGHV6-1*01 | 810 | 445 | 54.94 | 377 | 0.15 | 128 | |||||
| IGHV7-4-1*02 | 14402 | 6698 | 46.51 | 5103 | 2.33 | 1477 | |||||
| Totals | 612025 | 287359 | 46.95 |