Genotype 'B12' (Submission S00004)
NCBI Information
| Sample | Title |
|---|---|
| SAMN06675654 | B12 |
| Record Set | Title |
|---|---|
| SRR5408027 | Other Sequencing of human |
Legend:
- Allele names in italic are not listed in the reference set.
- Allele names in bold are put forward in the submission for consideration as inferred sequences.
- A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
- An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*02_S4497 | 6921 | IGHV1-2*02_S4497 | |||||||
| IGHV1-69*14_S3451 | 6647 | IGHV1-69*14_S3451 | |||||||
| IGHV2-70*01_S4660 | 171 | IGHV2-70*01_S4660 | |||||||
| IGHV3-43D*01_S6022 | 101 | IGHV3-43D*01_S6022 | |||||||
| IGHV3-64*01_S7468 | 617 | IGHV3-64*01_S7468 | |||||||
| IGHV3-64*01_S7947 | 104 | IGHV3-64*01_S7468 | |||||||
| IGHV3-9*01_S7647 | 7833 | IGHV3-9*01_S7647 | |||||||
| IGHV4-61*01_S9594 | 4425 | IGHV4-61*01_S9594 |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-18*01 | 5293 | 1825 | 34.48 | 1471 | 1.49 | 517 | YES | ||||
| IGHV1-18*04 | 14314 | 5902 | 41.23 | 4630 | 3.11 | 1323 | YES | ||||
| IGHV1-2*02_S4497 | 6921 | 2884 | 41.67 | 2268 | 1.77 | 739 | YES | ||||
| IGHV1-2*04 | 2619 | 1190 | 45.44 | 957 | 0.64 | 313 | YES | ||||
| IGHV1-24*01 | 3025 | 1581 | 52.26 | 1267 | 0.75 | 384 | YES | ||||
| IGHV1-3*01 | 9173 | 3376 | 36.80 | 2603 | 2.13 | 875 | YES | ||||
| IGHV1-45*02 | 116 | 56 | 48.28 | 48 | 0.04 | 22 | YES | ||||
| IGHV1-46*01 | 7553 | 3028 | 40.09 | 2429 | 1.93 | 778 | YES | ||||
| IGHV1-58*01 | 1138 | 459 | 40.33 | 370 | 0.32 | 102 | YES | ||||
| IGHV1-58*02 | 1226 | 482 | 39.31 | 381 | 0.32 | 122 | YES | ||||
| IGHV1-69*01 | 17625 | 9813 | 55.68 | 7430 | 3.64 | 2009 | YES | ||||
| IGHV1-69*02 | 3302 | 1768 | 53.54 | 1408 | 0.86 | 433 | YES | ||||
| IGHV1-69*06 | 13233 | 6594 | 49.83 | 5052 | 3.04 | 1458 | YES | ||||
| IGHV1-69*13 | 8171 | 4246 | 51.96 | 3223 | 2.05 | 994 | YES | ||||
| IGHV1-69*14_S3451 | 6647 | 3871 | 58.24 | 2985 | 1.72 | 927 | YES | ||||
| IGHV1-69-2*01 | 1058 | 543 | 51.32 | 403 | 0.33 | 185 | YES | ||||
| IGHV1-8*01 | 3359 | 1673 | 49.81 | 1310 | 0.95 | 472 | YES | ||||
| IGHV2-26*01 | 1380 | 794 | 57.54 | 653 | 0.33 | 225 | YES | ||||
| IGHV2-5*02 | 2215 | 981 | 44.29 | 794 | 0.54 | 313 | YES | ||||
| IGHV2-70*01 | 908 | 449 | 49.45 | 389 | 0.23 | 138 | YES | ||||
| IGHV2-70*01_S4660 | 171 | 68 | 39.77 | 60 | 0.06 | 23 | YES | ||||
| IGHV2-70D*04 | 1152 | 416 | 36.11 | 357 | 0.25 | 113 | YES | ||||
| IGHV3-11*01 | 5503 | 1747 | 31.75 | 1484 | 1.57 | 403 | YES | ||||
| IGHV3-11*06 | 6358 | 2235 | 35.15 | 1857 | 1.70 | 563 | YES | ||||
| IGHV3-13*01 | 581 | 135 | 23.24 | 115 | 0.17 | 51 | YES | ||||
| IGHV3-13*05 | 919 | 288 | 31.34 | 258 | 0.27 | 76 | YES | ||||
| IGHV3-15*01 | 8628 | 2857 | 33.11 | 2448 | 1.84 | 807 | YES | ||||
| IGHV3-20*01 | 388 | 55 | 14.18 | 52 | 0.10 | 15 | YES | ||||
| IGHV3-21*01 | 24451 | 8828 | 36.10 | 7148 | 5.12 | 1986 | YES | ||||
| IGHV3-23*01 | 66328 | 23507 | 35.44 | 17597 | 11.82 | 4635 | YES | ||||
| IGHV3-30-3*03 | 7304 | 2616 | 35.82 | 2237 | 1.59 | 703 | YES | ||||
| IGHV3-30-5*01 | 3818 | 1323 | 34.65 | 1190 | 0.69 | 309 | YES | ||||
| IGHV3-33*01 | 14360 | 4826 | 33.61 | 4047 | 3.18 | 1098 | YES | ||||
| IGHV3-43*01 | 1711 | 626 | 36.59 | 566 | 0.44 | 143 | YES | ||||
| IGHV3-43D*01_S6022 | 101 | 42 | 41.58 | 37 | 0.04 | 12 | YES | ||||
| IGHV3-48*01 | 4246 | 883 | 20.80 | 767 | 1.50 | 275 | YES | ||||
| IGHV3-48*02 | 3573 | 1324 | 37.06 | 1135 | 0.72 | 348 | YES | ||||
| IGHV3-48*03 | 7663 | 2329 | 30.39 | 1997 | 2.09 | 615 | YES | ||||
| IGHV3-49*03 | 464 | 148 | 31.90 | 124 | 0.15 | 47 | YES | ||||
| IGHV3-49*04 | 1040 | 261 | 25.10 | 219 | 0.30 | 91 | YES | ||||
| IGHV3-49*05 | 340 | 120 | 35.29 | 103 | 0.11 | 43 | YES | ||||
| IGHV3-53*01 | 5163 | 1588 | 30.76 | 1393 | 1.45 | 328 | YES | ||||
| IGHV3-53*04 | 3393 | 1413 | 41.64 | 1232 | 0.84 | 293 | YES | ||||
| IGHV3-64*01 | 516 | 116 | 22.48 | 100 | 0.13 | 30 | YES | ||||
| IGHV3-64*01_S7468 | 617 | 198 | 32.09 | 177 | 0.15 | 69 | YES | ||||
| IGHV3-64*01_S7947 | 104 | 76 | 73.08 | 62 | 0.02 | 16 | YES | ||||
| IGHV3-64D*06 | 4698 | 1723 | 36.68 | 1456 | 1.01 | 482 | YES | ||||
| IGHV3-66*02 | 1935 | 603 | 31.16 | 543 | 0.57 | 137 | YES | ||||
| IGHV3-7*03 | 12064 | 3666 | 30.39 | 3092 | 3.12 | 962 | YES | ||||
| IGHV3-72*01 | 373 | 79 | 21.18 | 67 | 0.09 | 26 | YES | ||||
| IGHV3-73*02 | 1438 | 525 | 36.51 | 451 | 0.33 | 126 | YES | ||||
| IGHV3-74*01 | 3828 | 949 | 24.79 | 824 | 1.01 | 257 | YES | ||||
| IGHV3-9*01_S7647 | 7833 | 2418 | 30.87 | 2025 | 2.06 | 597 | YES | ||||
| IGHV4-30-2*01 | 1261 | 517 | 41.00 | 447 | 0.37 | 107 | YES | ||||
| IGHV4-31*03 | 6054 | 2394 | 39.54 | 1968 | 1.59 | 522 | YES | ||||
| IGHV4-34*01 | 9299 | 4084 | 43.92 | 3178 | 2.33 | 849 | YES | ||||
| IGHV4-38-2*01 | 2291 | 844 | 36.84 | 707 | 0.73 | 206 | YES | ||||
| IGHV4-39*01 | 16087 | 6401 | 39.79 | 5097 | 3.13 | 1421 | YES | ||||
| IGHV4-39*07 | 6403 | 1652 | 25.80 | 1414 | 2.08 | 419 | YES | ||||
| IGHV4-4*02 | 7343 | 3015 | 41.06 | 2453 | 2.03 | 764 | YES | ||||
| IGHV4-59*01 | 25026 | 11021 | 44.04 | 8562 | 4.84 | 1923 | YES | ||||
| IGHV4-61*01 | 2571 | 801 | 31.16 | 632 | 0.86 | 218 | YES | ||||
| IGHV4-61*01_S9594 | 4425 | 1582 | 35.75 | 1252 | 1.32 | 480 | YES | ||||
| IGHV4-61*02 | 4762 | 1742 | 36.58 | 1486 | 1.48 | 473 | YES | ||||
| IGHV5-10-1*03 | 14905 | 6354 | 42.63 | 4598 | 2.64 | 1371 | YES | ||||
| IGHV5-51*01 | 17491 | 5938 | 33.95 | 4426 | 2.96 | 1238 | YES | ||||
| IGHV5-51*03 | 6266 | 2752 | 43.92 | 2140 | 1.39 | 687 | YES | ||||
| IGHV6-1*01 | 3173 | 1309 | 41.25 | 1048 | 0.74 | 343 | YES | ||||
| IGHV7-4-1*02 | 3970 | 1621 | 40.83 | 1298 | 0.83 | 436 | YES | ||||
| Totals | 441664 | 171530 | 38.84 |